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@marbl

MarBL

Maryland Bioinformatics Labs

Popular repositories

  1. CHM13 CHM13 Public

    The complete sequence of a human genome

    866 94

  2. canu canu Public

    A single molecule sequence assembler for genomes large and small.

    C++ 631 177

  3. Krona Krona Public

    Interactively explore metagenomes and more from a web browser.

    JavaScript 443 99

  4. Mash Mash Public

    Fast genome and metagenome distance estimation using MinHash

    C++ 374 89

  5. MashMap MashMap Public

    A fast approximate aligner for long DNA sequences

    C++ 258 38

  6. merqury merqury Public

    k-mer based assembly evaluation

    Shell 258 20

Repositories

Showing 10 of 38 repositories
  • verkko Public
    Python 249 27 25 2 Updated May 2, 2024
  • Winnowmap Public

    Long read / genome alignment software

    C 220 20 25 0 Updated Apr 30, 2024
  • rukki Public

    Extracting paths from assembly graphs

    Rust 17 0 18 0 Updated Apr 26, 2024
  • ModDotPlot Public
    Python 89 MIT 7 3 0 Updated Apr 23, 2024
  • canu Public

    A single molecule sequence assembler for genomes large and small.

    C++ 631 177 20 3 Updated Apr 19, 2024
  • training Public

    Genome Assembly 102

    Shell 5 0 0 0 Updated Apr 15, 2024
  • parsnp Public

    Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surroundin…

    C++ 117 24 22 0 Updated Apr 12, 2024
  • HG002 Public

    A complete diploid human genome

    76 4 1 0 Updated Apr 10, 2024
  • canu-regression Public

    Regression test cases and results for Canu.

    Shell 0 0 0 0 Updated Apr 5, 2024
  • T2T-Browser Public

    Genome browser hub for the T2T genomes and resources

    HTML 5 0 0 0 Updated Apr 2, 2024
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