kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
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Updated
Apr 18, 2024 - Python
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
GWAS analysis process based on EMMAX software
DRAGGER: Drug Repositioning by Analysis of GWAS and Gene Expression in R (maintained version). For publication version, see https://github.com/AEstebanMar/DAGGER-publication
multiple imputation for association studies
tips and tricks in genome-wide association studies - a tutorial
Make interactive LocusZoom plots from a local GWAS file
A web service to upload and share GWAS results with LocusZoom.js
A pipeline to predict risk genes, implicated cell types and drugs for repurposing based on known risk genes (derived from GWAS) for complex traits.
A pipeline for GEM And GWAS Automation
GWAS summary statistics files QC tool
A simple GWAS parser + CLI
RHAPSODY WP3 Pre-Diabetes analysis script
This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.
We suggest a novel way of defining NCD as a continuous phenotype, and we employ a mixed linear model to account for pronounced population stratification in the South Asian sample, which is more diverse than European samples, for example.
Tool for genome wide association studies with Bayesian inference and statistical learning
Analysis code and processing stages for Genome-Wide meta-analysis of low grip strength in older people.
A shinyapp for performing GWAS in rapeseed based on a core collection
From QC to summary statistics
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