EDA of different databases to extract IBD-relevant genes, their coverage in a 10X Genomics spatial transcriptomics panel and the main cell types and tissues related to these genes.
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Updated
May 18, 2024 - Jupyter Notebook
EDA of different databases to extract IBD-relevant genes, their coverage in a 10X Genomics spatial transcriptomics panel and the main cell types and tissues related to these genes.
Simple wrapper for the GWAS Catalog
tool for probabilistic correction of Winner's Curse in two-stage GWAS
Easily install and load the hapiverse
An Alfred workflow to browse the GWAS catalog
pandasGWAS: a Python package for easy retrieval of GWAS Catalog data
Cancer variant data from genome-wide association studies (GWAS)
R package to access GWAS Catalog FTP data
Analysis of genotype data from 23andMe DNA testing.
Analysis of regulatory impacts of autism-associated SNPs on biological pathways in the fetal and adult cortex.
Snakemake workflow designed to annotate VCF files withe SnpEff / SniSift
De novo discovery of traits co-occurring with chronic obstructive pulmonary disease.
A curated list (with links) of useful tools for genome-wide association analysis.
Make interactive LocusZoom plots from a local GWAS file
Extracting disease-gene associations from the GWAS Catalog
gwasrapidd: an R package to query, download and wrangle GWAS Catalog data
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