A containerized nextflow pipeline designed to annotate prokaryote genomes.
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Updated
Mar 13, 2022 - Nextflow
A containerized nextflow pipeline designed to annotate prokaryote genomes.
Empirical intron annotation for Loxodes magnus genome assembly
Scripts I wrote as a graduate research assistant while working on the Wyeomyia smithii Genome project for Dr. Elizabeth Cooper's Lab at UNC Charlotte
Linked Data Platform for Animal Breeding & Genomics
Hands-on Introduction to Data Analysis for Genomics and Transcriptomics
Retroviral Integration Pattern Analysis Tool
genome annotation length calculations.
Arche: a functional-optimized annotator for microbial meta(genomes)
analyzer for phytozome gff files and pacid for genes.
ruby gem for analyzing miniprot protein to genome alignments.
Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines; I was a developer on this project at The Institute for Genomic Research/J. Craig Venter Institute from 2005 to 2008.
Scripts for Hill et al. (2023) doi:10.1093/gbe/evad038 🌿
De novo assembly of the red legged patridge (Alectoris rufa) genome
The genome of the contractile demosponge Tethya wilhelma
🐳 Apollo 2.X Docker Image
Website on genome annotation
final project of the advanced programming classes, course of Genomics bachelor degree - UniBo.
a miniprot alignments analyzer for protein alignments to draft genomes.
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