Materials for the ACE - Uganda course "Principles of Sequence Analysis and Phylogenetics" given in Spring 2020.
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Updated
Mar 19, 2020
Materials for the ACE - Uganda course "Principles of Sequence Analysis and Phylogenetics" given in Spring 2020.
Simulate basic population genetics on fake creatures' DNA. Concepts of mutation, crossover, fitness distribution covered. Prototype algorithm for ProcJam 2018
Code and raw data used in the analyses for: Trans-acting genetic variation affects the expression of adjacent genes via horizontal mechanisms.
Genetic Insights from 23andMe Data Analysis: This repository contains Python code that processes 23andMe raw genomic data, performs SNP matching, and explores genetic traits. Genetic traits like eye color, height, intelligence, and disease risks are determined from matched SNPs.
Genetic Algorithms WS15/16 hda
Source code for the GADGET compute module: https://gadget.biosci.gatech.edu/compute/
Visualizing genetic ancestry with variational autoencoders
Python package for reading, combining, meta-analyzing, and saving GWAS summary statistics data.
DNAc is a programming language for DNAs.
Human gene mutation classification using convolutional neural networks
Introductory notes on using Geneious (Biomatters) at NIAID
Zhian Kamvar's Ph. D. dissertation from Oregon State University
Solving N-Queen problem using Genetic Algorithm.
Pipeline to compute associations between genome-wide trans QTL scores and phenotype of interest
MapMaker/Exp 3.0b and MapMaker/QTL 1.1, updated to add various improvements including multithreading
At The ODIN, we believe the future is going to be dominated by genetic engineering and consumer genetic design will be a big part of that. We are making that happen by creating kits and tools that allow anyone to make unique and usable organisms at home or in a lab or anywhere.
PhyloTrace is a GUI platform for a fully controllable cgMLST analysis workflow.
Transfer Learning of Gene Expression Signatures in Python.
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