Genetic Algorithm for gene Tree Construction/Correction optimal under sequence likelihood and reconciliation score
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Updated
Mar 2, 2019 - C
Genetic Algorithm for gene Tree Construction/Correction optimal under sequence likelihood and reconciliation score
Species tree estimation from gene trees via weighted quartets
Species tree estimation from gene trees via quartets
Compresses SimPhy datasets into a single gzipped file for all the gene trees and gzipped mulitple sequence alignments for all the loci.
Implementation of the Super-Reconciliation model for reconciling a set of trees accounting for segmental duplications and losses.
Species tree estimation from multi-copy gene trees
Coalescent-Aware Species Tree Length Estimation in Substitution-units
Shell script pipeline for inferring ML gene trees for many loci (e.g. genomic RAD loci)
AST: An Automated Sequence-Sampling Method for Improving the Taxonomic Diversity of Gene Phylogenetic Trees
Rooting species trees under the multi-species coalescent model
A tool for divide-and-conquer tree estimation via a shared distance matrix
Dynamic Programming (DP) based software Software to Estimate Species Tree by maximizing triplet agreement.
NGSphy: phylogenomic simulation of next-generation sequencing data
TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)
Phylogenetic orthology inference for comparative genomics
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