Prediction of genes in genomes with ambiguous stop codons
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Updated
Sep 28, 2022 - Java
Prediction of genes in genomes with ambiguous stop codons
This project deals with predicting the location of a gene in the human genome based off experimental data
EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format
The AugusMake pipeline is a Snakemake-based workflow for generating gene annotations using the Augustus software. AugusMake can perform gene predictions using any combination of the three methods: ab initio, with extrinsic hints, or by training a new species.
scripts associated with yam genome assembly
automatically create GLIMMER training materials from GenBank records
Pogigwasc gene prediction of Loxodes magnus genome
Practical and home works in the discipline Bioinformatics.
A toolkit for identifying gene homologs in closely related species.
Gene Prediction Meta Server is a project that aims to bring multiple offline gene prediction tools online and integrating them into a single online platform in a user-friendly way. The related video link is attached.
Using un-assembled genome sequence data from the Centers for Disease Control and Prevention (CDC) proceed through five distinct stages of analysis and interpretation of that data: 1-genome assembly, 2-gene prediction, 3-functional annotation, 4-comparative genomics and 5-production of a predictive webserver.
PredGenesGetPepts is an easy-to-use, beginner-friendly pipeline to call genes from fasta files, retrieve peptides and blasting them against a given protein database
Pipelines for gene and TE annotation of pangenomes.
Scans fasta sequences for putative viruses - uses prokka, blast, and hhpred to predict ORFs and gene products
Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.
Deep learning based method called hist2RNA to predict the expression of genes using digital images of stained tissue samples
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