Automated protein function prediction is critical for the annotation of uncharacterized protein sequences, where accurate prediction methods are still required.we expect to create an accurate prediction model that assigns the best sub-graph of the gene ontology to each new protein and output a prediction score for this sub-graph and/or each pred…

Link Gene Ontology IDs to cell types

NCBI Medical Genetics, UMLS Unified Medical Language System Concepts and PubMed linked citations

An efficient attention-based approach for Protein Function Prediction using skip-gram features. Proposing two novel approaches, namely, OntoPred and OntoPredPlus capable to annotate protein sequences accurately.

Kay Prüfer’s FUNC — a package for detecting significant associations between gene sets and ontological annotations

RNA-seq pipeline to identify wasp-induced gene expression in Drosophila

DeepMiR2GO: Inferring Gene Ontology Function of Human MicroRNAs based on a deep multi-label classification model

Neuronal genes mutation interactions and analysis

Source code for "Molecular mechanisms implicated in myogenic differentiation of human alveolar mucosa derived cells" paper

This code was written and used to perform the comparative interactome analysis of β-arrestin1 and 2.

Measuring gene pleiotropy through Gene Ontologies and Protein Interactions

Candidate OPC–endothelial cell interactors

Tools for (Gene) Ontology-Based Phylogenetics Methods

Differential Gene Expression (DGE) Analysis in Curated Microarray Data of Breast Cancer Subtypes

scrape REVIGO Gene Ontology web app and plot results

Using DNA sequence alignment tools (ie. BLAST) to detect the existence of the GULO gene (used to biosynthesise vitamin-C) in varying different organisms.

Publication GO term annotation using ChatGPT

GOfreq: GO prediction by BLAST and PSIBLAST sequence search