PyRoss: inference, forecasts, and optimised control of epidemiological models in Python

Modular spatio-temporal models for epidemic and pandemic simulations

DEPRECATED IN FAVOR OF TuringLang/Turing-Workshop

Awesome-spatial-temporal-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included. Keep updating.

Agent-based modelling of pandemics using the Susceptible, Infected, Recovered (SIR) framework.

The companion repository to Computational Modeling of Infectious Disease by Chris von Csefalvay

Tutorials on math epidemiology and epidemiology informed deep learning methods

📈 Examination of the impact of COVID-19 spread by using a custom epidemiological model.

This repository contains the code for the paper "Infection Rate Models for COVID-19: Model Risk and Public Health News Sentiment Exposure Adjustments", by Ioannis Chalkiadakis, Kevin Hongxuan Yan, Gareth W. Peters, Pavel V. Shevchenko.

We are the AI-Epidemiology Modeling group at UCF. Our work is focused on the efficient integration of deep learning and epidemiological modeling. The website is under construction and will be ready soon.

Forecast COVID 19 trend for three regions in Italy.

Modelling epidemic curve with SIRD model.

Machine learning algorithms for the calibration of epidemiological compartmental models: application to the Italian COVID-19 outbreaks in Italy and to the newly developed SUIHTER model.

A simple UI to easily build and run custom epidemic models.

YouTube Video Viralization Tool: a mathematical tool to optimize efforts of making viral youtube videos.

A Random Forest model for predicting incidence of potato blackleg at the landscape-scale.

The official manual to the epispot package

Code used to produce results and figures for BA Pathology project on the prospects of a BCG vaccine program in Great Britain. Developed by Joanna Vieira O'Neill, University of Cambridge.

Rumour spreading models on social networks

Code for the paper "Modelling the SARS-CoV-2 epidemic in Croatia: a comparison of three analytic approaches"