Performing RNA-Seq data analysis and quality control using DESeq2 in R.
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Updated
Jun 9, 2023 - R
Performing RNA-Seq data analysis and quality control using DESeq2 in R.
Method of Combined P-value to identify Differential Expressed Gene in dataset
Bioinformatics - Differential Expression Analysis
Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.
Differential gene expression analysis of Nannochloropsis oceanica growth with or without beneficial/harmful bacteria.
MICTI- Marker gene Identification for Cell Type Identity
Multi-omics differential expression and integration using PPI networks
Differential gene expression analysis exercise for the course Analytical Methods in Cancer Genomics 2023. The goal is to perform analysis of RNA-Seq data.
EasyDEA: An Automated Tool for Differential Expression Analysis
A library for differential expression and gene set enrichment analysis based on hydra and pydantic.
Differential gene expression and gene enrichment analyses of B-cell line with ectopic expression of HIV-1 Tat protein
R Shiny app for differential-expression analysis using T-test. The app is automatically deployed via GH Actions to shinyapp.io available as https://fuzzylife.shinyapps.io/diffExpr/
In this lab we will perform a differential expression analysis starting from scratch. Doxorubicin is a commonly prescribed cancer drug, but one of its side effects is cardiotoxicity. This drug damages heart cells by binding to the protein topoisomerase-II beta, or Top2b.
A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.
This is a compilation of my scripts for denovo-RNA-Seq assembly, annotation, and get count metrics for Differential gene expression analysis in Nesi hpc.
GWAS of Postmortem Brain Samples Sheds Light on the Development of Schizophrenia and Bipolar Disorder
RNA-Seq analysis pipeline for investigating transcriptional changes during mammalian cardiac regeneration.
Analysis of data from GEO
Material used for a course on transcriptomics, covering transcriptome assembly, transcriptome functional annotation, differential expression analysis, and functional annotation data mining
Differential gene expression and gene enrichment analyses of B-cell lines with stable and transient ectopic expression of HIV-1 Tat protein
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