Goo is the Blender library for simulating biological cells, tissues and embryos in 3D.
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Updated
Mar 15, 2023 - SCSS
Goo is the Blender library for simulating biological cells, tissues and embryos in 3D.
sEMTor is an online simulation for epithelial-mesenchymal transitions (EMT)
This repo contains code and presentations used for ad-hoc analyses regarding liver cell toxicology and development. It also contains analyses on human and mice immune cells.
Independent project I undertook to perform a full ChIP-Seq analysis of the transcription factor Nanog in Zebrafish embryos.
UChicago Molecules to Organisms Fundamentals Sequence R Code: Ecology, Quantitative Bio, Genetics, Physiology, Developmental Bio
Files used to generate Michelle Franc Ragsac's Ph.D. Dissertation
R package that uses rstan capabilities to sample using `HMC' and inference for developmental rate dynamics of species in ecology
Bayesian model selection for the Drosophila gap gene network
Comprehensive analysis of differential gene expression using Bayesian statistics and advanced statistical modeling techniques. The project includes scripts, data, figures, and analysis results.
"A quantitative principle to understand 3D cellular connectivity in epithelial tubes" Gomez-Galvez et al
Lab website.
Implementation of two models which study how positional information is encoded and interpreted in the developing embryo.
"Theoretical tool bridging cell polarities with development of robust morphologies" published in eLife (2018)
Custom codes for Flysta3D paper.
Analysis of junctional protein localization patterns in epithelial tissues
Deep Learning Based Models for Preimplantation Mouse and Human Development
a mathematica implementation of the cellular-potts model
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