A minimal toolset for analyzing protein localization patterns and tissue structure in the Xenopus laevis neural plate epithelium, supporting

• "Mechanical control of neural plate folding by apical domain alteration".
  Miho Matsuda, Jan Rozman, Sassan Ostvar, Karen Kasza, Sergei Sokol.
  Nature Communications 2023. https://doi.org/10.1038/s41467-023-43973-x

Sample Outputs

cell morphology and tissue structure

cell outline networks

junction morphology

junction intensities

Dependencies

• scikit-image
• numpy
• sknw

Authors

Sassan Ostvar and Karen Kasza