Goo is the Blender library for simulating biological cells, tissues and embryos in 3D.
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Updated
Mar 15, 2023 - SCSS
Goo is the Blender library for simulating biological cells, tissues and embryos in 3D.
Python code to model the syncytial development of a cricket in 3D. Additional Mathematica Code for rendering mesh2 objects in povray.
sEMTor is an online simulation for epithelial-mesenchymal transitions (EMT)
This repo contains code and presentations used for ad-hoc analyses regarding liver cell toxicology and development. It also contains analyses on human and mice immune cells.
Custom codes for Flysta3D paper.
Analysis of junctional protein localization patterns in epithelial tissues
Independent project I undertook to perform a full ChIP-Seq analysis of the transcription factor Nanog in Zebrafish embryos.
UChicago Molecules to Organisms Fundamentals Sequence R Code: Ecology, Quantitative Bio, Genetics, Physiology, Developmental Bio
Deep Learning Based Models for Preimplantation Mouse and Human Development
Bayesian model selection for the Drosophila gap gene network
Comprehensive analysis of differential gene expression using Bayesian statistics and advanced statistical modeling techniques. The project includes scripts, data, figures, and analysis results.
a mathematica implementation of the cellular-potts model
Expression of Wnt signaling components in the brachiopod Terebratalia transversa
Analysis scripts for the Vertesy 2018 paper: "Parental haplotype specific single-cell transcriptomics reveal incomplete epigenetic reprogramming in human female germ cells"
GitHub Repository which is used as a Maven Repository
Lab website.
Implementation of two models which study how positional information is encoded and interpreted in the developing embryo.
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