A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
-
Updated
Apr 30, 2024 - Python
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
A Python library for reading and writing Flow Cytometry Standard (FCS) files
Image Mass Cytometry analysis pipeline
A data-centric flow/mass cytometry automated analysis framework
Huge-scale, high-performance flow cytometry clustering in Julia
FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
Integration of multi-batch cytometry datasets
Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.
Histology Topography Cytometry Analysis Toolbox (histoCAT) for Web.
Shape-Out has been superseded by Shape-Out 2.
Fast embedding ot multidimensional datasets, great for cytometry data
An R package for analyzing high-dimensional cytometry data using the tidyverse.
Algorithms for the selection of fluorescent reporters.
A clustering algorithm that will perform clustering on each of a time-series of discrete datasets, and explicitly track the evolution of clusters over time.
Import script needed to build FluPRINT database from source 💻
An R package for visualization and relational analysis of cell states, based on the Mapper algorithm from topological data analysis.
R scripts to help with your flow cytometry analysis. Batch index export and overlays
Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation
Tools for Imaging Flow Cytometry
Add a description, image, and links to the cytometry topic page so that developers can more easily learn about it.
To associate your repository with the cytometry topic, visit your repo's landing page and select "manage topics."