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29 public repositories
matching this topic...
Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.
Updated
Apr 17, 2024
Jupyter Notebook
A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.
A curated list of awesome computational cryo-EM methods.
Updated
Mar 29, 2024
Jupyter Notebook
register 3D point clouds using rotation, translation, and scale transformations.
Updated
Jun 9, 2022
Python
Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy.
The Swiss Army knife for carbohydrate structure validation, refinement and analysis
TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.
Updated
Mar 20, 2024
MATLAB
example set up for Relion on AWS ParallelCluster for CryoEM
Updated
May 21, 2022
Shell
Overcoming the preferred orientation problem in cryoEM with self-supervised deep-learning
Updated
May 3, 2024
Python
A Docker-based distribution of Appion-Protomo.
.MRC and .EM thumbnailer for GNOME
Updated
Jan 2, 2022
Python
volumetric image toolkit for simple feature detection (segment tomograms)
Plot the 2D histogram of Euler angles covered by a set of cryo-EM particles
Updated
Oct 30, 2021
Python
KLT picker: Particle picking using data-driven optimal templates (Python version)
Updated
May 11, 2021
Python
Plot the histogram of local resolution values of a cryo-EM reconstruction
Updated
Oct 30, 2021
Python
A lightweight script to monitor RELION jobs and send information over Slack DMs
Updated
Sep 16, 2022
Python
Plot the class distribution as a function of iteration from a Class2D or Class3D job from RELION
Updated
Oct 30, 2021
Python
helper scripts for Electron microscopy data processing
Updated
Dec 7, 2020
Python
Report the number of particles in each class from a run_data.star file produced by RELION
Updated
Oct 30, 2021
Python
Python3 tools for simulating cryoEM particle data.
Updated
Dec 10, 2019
Jupyter Notebook
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