Urinx / alphafold_pytorch Star 384 Code Issues Pull requests Discussions An implementation of the DeepMind's AlphaFold based on PyTorch for research deep-learning contact-prediction structure-prediction protein-structure-prediction pytorch-implementation alphafold casp13 Updated Jan 23, 2021 Python
elttaes / Revisiting-PLMs Star 55 Code Issues Pull requests Exploring Evolution-aware & free protein language models as protein function predictors benchmark pytorch contact-prediction stability multiple-sequence-alignment protein-annotation function-prediction protein-classification alphafold protein-language-model alphafold2 fitness-prediction zero-shot-prediction msa-construction msa-transformer esm1b remote-homology-detection metal-ion-binding Updated Feb 26, 2023 Python
psipred / DeepCov Star 44 Code Issues Pull requests Fully convolutional neural networks for protein residue-residue contact prediction protein-structure contact-prediction Updated Mar 25, 2019 Python
rigdenlab / conkit Star 20 Code Issues Pull requests Contact Prediction ToolKit python contact-prediction Updated Jul 22, 2022 Python
soedinglab / CCMgen Star 20 Code Issues Pull requests dca contact-prediction Updated Jul 16, 2021 HTML
psipred / DeepMetaPSICOV Star 19 Code Issues Pull requests Deep ResNet-based protein contact prediction deep-learning protein-structure resnet contact-prediction Updated Mar 30, 2020 C
psipred / metapsicov Star 5 Code Issues Pull requests Consensus Structural contact prediction proteins contacts contact-prediction Updated Apr 8, 2019 C