Benchmarking simulation frameworks for chromatin folding. (https://resgen.io/l/?d=IBvynlJsQ5qMAvSa9JP3XQ)
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Updated
Mar 21, 2024 - Jupyter Notebook
Benchmarking simulation frameworks for chromatin folding. (https://resgen.io/l/?d=IBvynlJsQ5qMAvSa9JP3XQ)
Code to model active loop extrusion on chromatin using hybrid MD-MC.
ChIPseq pipeline for Pasini's lab written in snakemake
Multi Resolution Analysis of Tiling Arrays. (R package)
ChIP-seq normalization according to background reads density. (R package)
Sample Analysis for diffloop paper
Make a phylogeny using the chromatin structure information extracted from Hi-C experiments (mirror of the original repo)
ChIP-seq pipeline specific for the Zwart lab
chromhmmData: Chromosome Size, Coordinates and Anchor Files
Documenation Chromatin Accessibility Atlas
Statistical Modeling of ChIA-PET interactions
This is the code for the chromatin packing model in macrogenomics engineering study
HiSIF: Genome-wide chromatin interactions identify characteristic promoter-distal loops
Workflow for processing single-cell sortChIC data
🖥️📚 WorkflowR site containing code and analyses produced throghout my PhD thesis.
Using chromatin-chromatin interaction scores generated by the Capture Hi-C technology, I developed this R code during my six week internship in the Spicuglia lab, part of the INSERM institute (TAGC) related to the Aix-Marseille University, France, in order to identify the DNA interactions happening between different regions, specifically the int…
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