chromhmmData: Chromosome Size, Coordinates and Anchor Files
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Updated
Jul 10, 2021
chromhmmData: Chromosome Size, Coordinates and Anchor Files
ChIPseq pipeline for Pasini's lab written in snakemake
Benchmarking simulation frameworks for chromatin folding. (https://resgen.io/l/?d=IBvynlJsQ5qMAvSa9JP3XQ)
Code to model active loop extrusion on chromatin using hybrid MD-MC.
Documenation Chromatin Accessibility Atlas
Multi Resolution Analysis of Tiling Arrays. (R package)
Reconstruction of 3D conformation of chromatin fiber using single cell Hi-C data
ChIP-seq normalization according to background reads density. (R package)
This is the code for the chromatin packing model in macrogenomics engineering study
Sample Analysis for diffloop paper
HiSIF: Genome-wide chromatin interactions identify characteristic promoter-distal loops
Workflow for processing single-cell sortChIC data
Using chromatin-chromatin interaction scores generated by the Capture Hi-C technology, I developed this R code during my six week internship in the Spicuglia lab, part of the INSERM institute (TAGC) related to the Aix-Marseille University, France, in order to identify the DNA interactions happening between different regions, specifically the int…
ChIP-seq pipeline specific for the Zwart lab
Make a phylogeny using the chromatin structure information extracted from Hi-C experiments (mirror of the original repo)
Add a description, image, and links to the chromatin topic page so that developers can more easily learn about it.
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