Quantifying 2D cell shape and epithelial tissue dynamics
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Updated
Sep 22, 2023 - Python
Quantifying 2D cell shape and epithelial tissue dynamics
Cell segmentation using convolutional natural networks
Deep learning method presented in the Translational Vision Science & Technology (TVST) journal to segment cells from corneal endothelium images obtained with specular microscopy and subsequently infer the corneal parameters.
Official and maintained implementation of the dataset paper "The TYC Dataset for Understanding Instance-Level Semantics and Motions of Cells in Microstructures" [ICCVW 2023].
🔬 A U-Net based deep learning architecture for cell segmentation
MIC-MAQ for Microscopy Images of Cells - Multi Analyses and Quantifications is an ImageJ/Fiji Plugin for automatic segmentation of nuclei and/or cells for quantifications in other channels including foci detection
This repository contains the Unet architecture built with Pytorch library. Here, the Unet architecture is used to perform the image segmentation.
pipeline that converts Deepcell generated instance segmentation masks of nuclei from an ome-tiff to Cell Objects with auto-generated cytoplasms in QuPath
Research project to track movement of Hepatoceullar Carcinoma cells.
Example workflows for image processing, segmentation and analysis. Stitching and alignment functions also implemented.
The code implementation for cell segmentation
Application of polarized optical microscopy-based MFA imaging and semantic segmentation-based cell-by-cell anatomy measurement to hardwoods having various anatomical characteristics
I am pursuing Machine Learning Course at Ahmedabad University. This Repository contains the Code and Dataset, of the paper to be Reproduced during this course.
A small GUI application for counting cells in microscope images
HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇
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