An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
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Updated
May 20, 2024 - Python
An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.
Copy number calling and variant classification using targeted short read sequencing
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
cell-free ChIP-seq pipeline
A code to simulate the events of cell-free protein expression
Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
R package to work with ctDNA sequencing data
Hunting for CMV and HHV-6 in cfDNA sequence
Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.
Structural Variants in cell-free tumor DNA
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