a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
-
Updated
May 14, 2024 - Jupyter Notebook
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Deep Learning Library for Single Cell Analysis
Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection failure, and (3) capture particle merging and splitting events resulting from occlusion or genuine aggregation and dissociation events
Count-Ception: Counting by Fully Convolutional Redundant Counting
Integrated Cell project implemented in pytorch
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
Explainable AI model of cell behavior
Cell cycle inference in single-cell RNA-seq
Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classif…
Introductory Git Repository for the Biophysics Research Group at BYU
Tools for building databases of experimental data for constructing whole-cell models
3D shape analysis using deep learning
Communitiy-based Cell Line Ontology
Automated Cell Toolkit
Rule-based modeling for whole-cell models.
Easy-to-use traction force microscopy (TFM) software
Language for describing whole-cell models as reaction networks
Add a description, image, and links to the cell-biology topic page so that developers can more easily learn about it.
To associate your repository with the cell-biology topic, visit your repo's landing page and select "manage topics."