Analysis and characterisation of cells within the gut wall using deep learning models. The current focus is on studying enteric neurons and enteric glia.
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Updated
May 14, 2024 - ImageJ Macro
Analysis and characterisation of cells within the gut wall using deep learning models. The current focus is on studying enteric neurons and enteric glia.
Simple tool for Calcium-imaging data preprocessing, based on timing-metadata from Olympus Fluoview sowtware
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Calibrated inference of spiking from calcium ΔF/F data using deep networks
CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).
A collection of useful methods for handling, processing, and visualizing calcium imaging data.
"ViNe-Seg: A deep-learning tool for semi-automatic neural soma segmentation and subsequent analysis in a user-friendly interface"
Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
Experimentlal pure-python API to read Inscopix data
Build your own camera-based multi-fiber and multi-color fiber photometry (FIP) system!
PVBS (Prairie View Browsing Solution) - General-purpose GUI for electrophysiology (patch clamp) and calcium imaging
Acquisition and analysis of Ca++ imaging and behavior video streams without academic opportunism
Bonsai package for controlling headborne, calcium imaging miniscopes
Signal Processing Toolbox for Calcium Imaging Data
Fully automated pipeline for calcium imaging analysis. (Description updated on Feb.12 2024)
Flow-Registration toolbox for 2P motion compensation
Electrophysiology analysis in ventral midbrain-striatal-cortical organoids (MISCOs) pre- and post- optogenetic stimulation.
Electrophysiology analysis in ventral midbrain-striatal-cortical organoids (MISCOs) pre- and post- optogenetic stimulation.
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