Brain Tumor Segmentation Pipeline for BraTS Challenge

Brain tumor classification based on MGMT methylation status present on the tumor cell.

Official Implementation of SegFormer3D: an Efficient Transformer for 3D Medical Image Segmentation (CVPR2024)

LHU-Net: A Light Hybrid U-Net for Cost-efficient, High-performance Volumetric Medical Image Segmentation

Multimodal Brain Tumor Segmentation Boosted by Monomodal Normal Brain Images

A comprehensive review of techniques to address the missing-modality problem for medical images

Official BraTS 2023 Segmentation Performance Metrics

Code for automated brain tumor segmentation from MRI scans using CNNs with attention mechanisms, deep supervision, and Swin-Transformers. Based on my Master's dissertation project at Brunel University, it features 3 deep learning models, showcasing integration of advanced techniques in medical image analysis.

Implementation of the Mean Teacher method for brain lesion segmentation based on DeepMedic, from paper published in IPMI 2019

Segmentation of brain tumors (Glioma) in MRIs using Meta's model SAM (Segment anything model)

The BRATS Toolkit is a suite of tools designed to facilitate the processing and analysis of the Brain Tumor Segmentation (BRATS) dataset.

Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks

Interactive Brain Tumor Segmentation with FocalClick and CDNet

[MIDL 2023] MMCFormer: Missing Modality Compensation Transformer for Brain Tumor Segmentation

Official Pytorch Code of KiU-Net for Image/3D Segmentation - MICCAI 2020 (Oral), IEEE TMI

[MICCAI 2022 Best Paper Finalist] Bayesian Pseudo Labels: Expectation Maximization for Robust and Efficient Semi Supervised Segmentation

Using the BraTS2020 dataset, we test several approaches for brain tumour segmentation such as developing novel models we call 3D-ONet and 3D-SphereNet, our own variant of 3D-UNet with more than one encoder-decoder paths.

Official and maintained implementation of the paper "OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data" [BMVC 2021].

Attention-Guided Version of 2D UNet for Automatic Brain Tumor Segmentation

We segmented the Brain tumor using Brats dataset and as we know it is in 3D format we used the slicing method in which we slice the images in 2D form according to its 3 axis and then giving the model for training then combining waits to segment brain tumor. We used UNET model for training our dataset.