A software toolkit for the interconversion of standard data models for phenotypic data

Pheno-Ranker is a tool designed for performing semantic similarity analysis on phenotypic data structured in JSON format, such as Beacon v2 Models or Phenopackets v2.

Package for biomedical data model and metadata ingress management

Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks

Proyecto de manejo de información digital sobre pruebas de función respiratoria mediante anotación semántica con Hypothes.is

Computational Analysis of Novel Drug Opportunities

BioMedICUS: A biomedical and clinical NLP engine.

Data ingest pipeline for OMIM.

R package for delineating temporal dataset shifts in Eletronic Health Records

MNE-CPP: A Framework for Electrophysiology

List with overview of significant conferences and journals related to Biomedical & Health Informatics

Services and guidelines for normalizing disease terms

This Python script is designed to provide detailed information on interactions between drugs and genes using the Sydney module for natural language processing and the Drug Gene Interaction Database (DGIdb) API. Users can input the names of three drugs separated by commas and receive information on the interactions with the corresponding genes.

Services and guidelines for normalizing genes

Alaska Project Ideas, mentored by the researchers and collaborators of University of Alaska and supported by open-source entities and enthusiasts in Alaska.

Build project for all CEDAR Java repositories

Just a list of Singularity definition files maintained by the Biomed Applications Group

Website for the JuliaHealth organization (powered by Franklin.jl).

An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being a free UMLS license holder. This repo will subset 2021AB UMLS native release, introduce/build upon UMLS provided tools to load a configured subset into first a relational database --> MySQL, SQLite, PostgreSQL…

Just a list of Apptainer definition files maintained by the Biomed Applications Group