NER and Relation Extraction from Electronic Health Records (EHR).
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Updated
Mar 16, 2022 - Python
NER and Relation Extraction from Electronic Health Records (EHR).
Browse Covid-19 & SARS-CoV-2 Scientific Papers with Transformers 🦠 📖
Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)
MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
Ready to use BioBert pytorch weights for HuggingFace pytorch BertModel 😌
Relation Extraction using BERT and BioBERT - using BERT, we achieved new state of the art results
Multi Label Text Classification of ICD-10-CM codes on the clinical record corpus for eHealth Lab CLEF - 2020
Training and computational/visualization analysis of BERT and BioBERT using PyTorch and huggingface.
A cost-sensitive BERT that handles the class imbalance for the task of biomedical NER.
COVID-19 Open Research Dataset Challenge (CORD-19)
The traditional machine learning models give a lot of pain when we do not have sufficient labeled data for the specific task or domain we care about to train a reliable model. Transfer learning allows us to deal with these scenarios by leveraging the already existing labeled data of some related task or domain. We try to store this knowledge gai…
👑🦠 Annotating PMC and PubMed articles for Covid-related entities
summer internship project @ JetBrains Research
Farida Hanna Campbell 2023
Fine-tuning pre-trained BERT architectures from Hugging face
Literature Mining for Neurodegenerative disease
This project is a demo for Bert Question Answering on medical data.
NLP Named Entity Recognition dalam bidang Biomedis, mendeteksi teks dan membuat klasifikasi apakah teks tersebut mempunyai entitas plant atau disease, memberi label pada teks, menguji hubungan entitas plant dan disease, menilai kecocokan antara kedua entitas, membandingkan hasil uji dengan menggunakan models BERT
A simple binary prediction model that gets the Alzheimer's drugs' description texts as input. It classifies the drugs into two Small Molecules (SM) and Disease modifying therapies (DMT) categories. The model utilizes BERT for word embeddings.
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