Convert SV VCFs to BED, a wrapper for bcftools query
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Updated
Jul 20, 2019 - Python
Convert SV VCFs to BED, a wrapper for bcftools query
The main aim of this little project is to compare the European allele frequencies of the 1k genomes project with the gnomad frequencies.
A collection of scripts for filtering annotated variant call format files
convert genotype array output into annotated IBD segments
Scripts used on a cluster that demonstrate vcf file manipulation and preparation.
Merge in parallel, speeding up bcftools merge
This directory contains material that I've used in different courses
1,674 S.cerevisiae genomics data
a tool for quickly getting the correct bcftools command
Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines
bcftools singularity container
Nextflow resequencing pipeline with bwa-mem and freebayes
VariantCaller is a wrapper for the 2022 gatk & bcftools best practices + phasing with WhatsHap.
Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)
A Nextflow variant normalization pipeline based on vt and bcftools
Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
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