Homework 2 for MCS 5603 Intro to Bioinformatics. Written in Python.
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Updated
Oct 16, 2014 - Python
Homework 2 for MCS 5603 Intro to Bioinformatics. Written in Python.
Association Rules for regex patterns in amino acid sequences
Predicting the subcellular location of eukaryotic proteins with support vector machines
In Agglomerative we start with all points as individual clusters and then keep on combining clusters until required number of clusters are not formed using linkages like single, complete, average, ward or centroid.
Recurrent neural network implementations for protein secondary structure prediction and language models
Finds sequences of nucleotide triplets, called codons, that specifies which amino acid will be added next during protein synthesis.
An implementation of the ID3 algorithm using an amino acid dataset.
DNA to Protein sequence perl app.
Creating plots using FASTA amino-acid files
Python Scripts for Haim Lab (Microbiology Research) Projects
A Python package that has functions for featue calculation of protein sequences. Features that are calculated by this package are niched for Epitope prediction.
Reconstruction of protein-protein interactions based on amino acid chain decomposition
For the convenience of checking the contents of gene, transcripts,nucleic acid or amino acid sequences.
FA21 Independent Study Semester Project
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
Sequence generation/sequence to sequence learning using amino acid sequences of Corona virus (SARS-COV2) by training on generative adversial network (GAN)
Program to determine the similarity of two amino acid sequences
Filter fasta sequences by length
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