Reconstruction of protein-protein interactions based on amino acid chain decomposition
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Updated
Jan 28, 2022 - Jupyter Notebook
Reconstruction of protein-protein interactions based on amino acid chain decomposition
An implementation of the ID3 algorithm using an amino acid dataset.
Translation of the FASTA file with genetic code into aminoacid code.
Translation amino acid sequence to DNA sequence.
Finds sequences of nucleotide triplets, called codons, that specifies which amino acid will be added next during protein synthesis.
Filter fasta sequences by length
For the convenience of checking the contents of gene, transcripts,nucleic acid or amino acid sequences.
FA21 Independent Study Semester Project
Program takes in a string of DNA, and converts it to a protein chain.
Predicting the subcellular location of eukaryotic proteins with support vector machines
Creating plots using FASTA amino-acid files
Narrowly, Find sequences including nucleotide(or amino acid) spacers (Broadly, you can find the speific sequences of front and back while ignoring the middle sequences), and Write the result of finding them to csv files.(Language: Python3.9)
Python Scripts for Haim Lab (Microbiology Research) Projects
An application for illustrating the relative distances between protein structures.
We're encoding the amino acid sequence into binary strings and building a quantum circuit for each one. Then, we're creating a list of Pauli operators for each circuit, one for each qubit, and multiplying them together to get a badass Hamiltonian.
Homework 2 for MCS 5603 Intro to Bioinformatics. Written in Python.
Program to determine the similarity of two amino acid sequences
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