Merge pull request #597 from tomopy/ci-update

CI: Update azurepipelines jobs

azure-pipelines.yml

@@ -16,47 +16,49 @@ trigger:
 
 jobs:
 
-- job: CUDA_Linux
-  pool:
-    name: Default
-    demands:
-    - CUDA_VERSION
-    - Agent.OS -equals Linux
-  strategy:
-    matrix:
-      Python37:
-        python.version: '37'
-    maxParallel: 4
-  steps:
-  - script: echo "CUDA version is $(CUDA_VERSION)"
-    displayName: Print CUDA version
-  - script: >
-      conda update --yes --quiet
-      -n base conda
-    displayName: Update conda
-  - script: >
-      conda env remove --yes
-      -n tomopy
-    displayName: Remove existing build environment
-  - script: >
-      conda env create --quiet --force
-      -n tomopy
-      -f envs/linux-$(python.version).yml
-    displayName: Create build environment
-  - script: conda list -n tomopy
-    displayName: List build environment
-  - script: |
-      source activate tomopy
-      pip install . --no-deps
-      cmake -S . -B build -GNinja -DCMAKE_INSTALL_PREFIX=$CONDA_PREFIX -DCMAKE_BUILD_TYPE=Release
-      cmake --build build
-      cmake --install build
-    displayName: Setup and install
-  - script: |
-      source activate tomopy
-      export CUDA_VERSION="$(CUDA_VERSION)"
-      pytest test -v
-    displayName: Run tests
+# NO CUDA RUNNER AVAILABLE
+# - job: CUDA_Linux
+#   pool:
+#     name: Default
+#     demands:
+#     - CUDA_VERSION
+#     - Agent.OS -equals Linux
+#   strategy:
+#     matrix:
+#       Python38:
+#         python.version: '38'
+#     maxParallel: 4
+#   steps:
+#   - script: echo "CUDA version is $(CUDA_VERSION)"
+#     displayName: Print CUDA version
+#   - script: |
+#       conda update --yes --quiet -n base conda
+#       conda install -n base conda-libmamba-solver
+#       conda config --set solver libmamba
+#     displayName: Update conda
+#   - script: >
+#       conda env remove --yes
+#       -n tomopy
+#     displayName: Remove existing build environment
+#   - script: >
+#       conda env create --quiet --force
+#       -n tomopy
+#       -f envs/linux-$(python.version).yml
+#     displayName: Create build environment
+#   - script: conda list -n tomopy
+#     displayName: List build environment
+#   - script: |
+#       source activate tomopy
+#       pip install . --no-deps
+#       cmake -S . -B build -GNinja -DCMAKE_INSTALL_PREFIX=$CONDA_PREFIX -DCMAKE_BUILD_TYPE=Release
+#       cmake --build build
+#       cmake --install build
+#     displayName: Setup and install
+#   - script: |
+#       source activate tomopy
+#       export CUDA_VERSION="$(CUDA_VERSION)"
+#       pytest --cov tomopy test -v
+#     displayName: Run tests
 
 - job: Linux
   pool:
@@ -65,6 +67,8 @@ jobs:
     matrix:
       Python-nomkl:
         python.version: 'nomkl'
+      Python-38:
+        python.version: '38'
     maxParallel: 4
   steps:
   - bash: echo "##vso[task.prependpath]$CONDA/bin"
@@ -83,16 +87,16 @@ jobs:
     displayName: Setup and install
   - script: |
       source activate tomopy
-      pytest test -v
+      pytest --cov=tomopy test -v
     displayName: Run tests
 
 - job: macOS
   pool:
     vmImage: 'macOS-latest'
   strategy:
     matrix:
-      Python37:
-        python.version: '37'
+      Python-38:
+        python.version: '38'
     maxParallel: 4
   steps:
   - bash: echo "##vso[task.prependpath]$CONDA/bin"
@@ -113,16 +117,16 @@ jobs:
     displayName: Setup and install
   - script: |
       source activate tomopy
-      pytest test -v
+      pytest --cov=tomopy test -v
     displayName: Run tests
 
 - job: Windows
   pool:
     vmImage: 'windows-latest'
   strategy:
     matrix:
-      Python37:
-        python.version: '37'
+      Python-38:
+        python.version: '38'
     maxParallel: 4
   steps:
   - powershell: Write-Host "##vso[task.prependpath]$env:CONDA\Scripts"
@@ -141,9 +145,5 @@ jobs:
     displayName: Setup and install
   - script: |
       call activate tomopy
-      coverage run --source tomopy -m pytest test -v
+      pytest --cov=tomopy test -v
     displayName: Run tests
-  - script: |
-      call activate tomopy
-      coverage report -m
-    displayName: Report coverage

envs/linux-37.yml → envs/linux-38.yml

@@ -2,28 +2,27 @@ name: tomopy
 channels:
   - conda-forge
 dependencies:
+  - c-compiler
   - cmake
   - cxx-compiler
   - dxchange
   - git
   - h5py
-  - importlib_metadata  # backport for python<3.8
   - ninja
   - numexpr
   - numpy<1.22.4|>=1.23.0
-  - python=3.7
+  - python=3.8
   - pywavelets
   - scikit-image>=0.17
   - scipy
   - setuptools_scm
   - setuptools_scm_git_archive
 # Optional packages
-  - coverage!=5.0.2
-  - pyctest>0.0.10
-  - timemory=*=py37h* # the nompi build
-  - gxx_linux-64<=8 # CUDA=10 requires gcc<8
+  # - pyctest>0.0.10
+  # - timemory=*=py37h* # the nompi build
   - mkl
   - mkl-devel
   - mkl_fft
   - opencv>=3.4
   - pytest
+  - pytest-cov

envs/linux-nomkl.yml

@@ -2,25 +2,25 @@ name: tomopy
 channels:
   - conda-forge
 dependencies:
+  - c-compiler
   - cmake
   - cxx-compiler
   - dxchange
   - git
   - h5py
-  - importlib_metadata  # backport for python<3.8
   - ninja
   - numexpr
   - numpy<1.22.4|>=1.23.0
-  - python=3.7
+  - python=3.8
   - pywavelets
   - scikit-image>=0.17
   - scipy
   - setuptools_scm
   - setuptools_scm_git_archive
 # Optional packages
-  - coverage!=5.0.2
-  - pyctest>0.0.10
-  - timemory=*=py37h* # the nompi build
+  # - pyctest>0.0.10
+  # - timemory=*=py37h* # the nompi build
   - nomkl
   - opencv>=3.4
   - pytest
+  - pytest-cov

envs/osx-37.yml → envs/osx-38.yml

@@ -2,26 +2,26 @@ name: tomopy
 channels:
   - conda-forge
 dependencies:
+  - c-compiler
   - cmake
   - cxx-compiler
   - dxchange
   - git
   - h5py
-  - importlib_metadata  # backport for python<3.8
   - ninja
   - numexpr
   - numpy!=1.22.4
-  - python=3.7
+  - python=3.8
   - pywavelets
   - scikit-image>=0.17
   - scipy
   - setuptools_scm
   - setuptools_scm_git_archive
 # Optional packages
-  - coverage!=5.0.2
-  - pyctest>0.0.10
+  # - pyctest>0.0.10
   - mkl
   - mkl-devel
   - mkl_fft
   - opencv>=3.4
   - pytest
+  - pytest-cov

envs/win-37.yml → envs/win-38.yml

@@ -2,25 +2,25 @@ name: tomopy
 channels:
   - conda-forge
 dependencies:
+  - c-compiler
   - cmake
   - cxx-compiler
   - dxchange
   - git
   - h5py
-  - importlib_metadata  # backport for python<3.8
   - ninja
   - numexpr
   - numpy!=1.22.4
-  - python=3.7
+  - python=3.8
   - pywavelets
   - scikit-image>=0.17
   - scipy
   - setuptools_scm
   - setuptools_scm_git_archive
 # Optional packages
-  - coverage!=5.0.2
   - mkl
   - mkl-devel
   - mkl_fft
   - opencv>=3.4,<4.2
   - pytest
+  - pytest-cov

envs/win-nomkl.yml

@@ -2,23 +2,23 @@ name: tomopy
 channels:
   - conda-forge
 dependencies:
+  - c-compiler
   - cmake
   - cxx-compiler
   - dxchange
   - git
   - h5py
-  - importlib_metadata  # backport for python<3.8
   - ninja
   - numexpr
   - numpy!=1.22.4
-  - python=3.7
+  - python=3.8
   - pywavelets
   - scikit-image>=0.17
   - scipy
   - setuptools_scm
   - setuptools_scm_git_archive
-# Optional packages
-  - coverage!=5.0.2
+  # Optional packages
   - nomkl
   - opencv>=3.4
   - pytest
+  - pytest-cov