Merge pull request #640 from decarlof/master

DOC: added doi to gridrec papers

doc/source/bibtex/zref.bib

@@ -97,7 +97,9 @@ @inproceedings{Dowd:99
 booktitle = {Proc. SPIE},
 year = {1999},
 volume = {3772},
-pages = {224--236}
+pages = {224--236},
+doi = {10.1117/12.363725},
+url={https://doi.org/10.1117/12.363725}
 }
 
 @article{Guizar:08,
@@ -182,7 +184,9 @@ @inproceedings{Rivers:06
 booktitle = {Proc. SPIE},
 year = {2012},
 volume = {8506},
-pages = {85060U-85060U-13}
+pages = {85060U-85060U-13},
+doi = {10.1117/12.930022},
+url = {https://doi.org/10.1117/12.930022}
 }
 
 @article{Toby:15,

envs/linux-cuda.yml

@@ -4,7 +4,7 @@ channels:
 dependencies:
   - c-compiler
   - cmake
-  - cuda-nvcc_linux-64
+  - cuda-nvcc_linux-64<12.4
   - cxx-compiler
   - dxchange
   - git

setup.cfg

@@ -47,7 +47,7 @@ install_requires =
     pywavelets==1.*
     scikit-image~=0.17
     # scipy 1.14 removes deprecated interpolation API
-    scipy==1.*,<1.14
+    scipy>=1.8,<1.14
     tifffile>=2019
 
 [options.packages.find]

source/tomopy/prep/stripe.py

@@ -480,7 +480,7 @@ def remove_stripe_based_filtering(tomo,
 
 
 def _create_1d_window(ncol, sigma, pad):
-    window = signal.gaussian(ncol + 2 * pad, std=sigma)
+    window = signal.windows.gaussian(ncol + 2 * pad, std=sigma)
     return window
 
 
@@ -1071,7 +1071,7 @@ def stripes_mask3d(weights,
     binary 3D mask with ones where stripes present.
 
     The method tries to eliminate non-stripe features in data by checking the
-    consistency of weights in three directions. The algorithm is 
+    consistency of weights in three directions. The algorithm is
     presented in the paper :cite:`Kazantsev:23`.
 
     .. versionadded:: 1.14