assigner 0.5.6 2019-05-01

assigner 0.5.6 2019-05-01

• included 2 simulated datasets
• updated documentation of assignment_ngs
• vignette to get started with assigner, finally!
• this is really starting to smell like a CRAN release
• work on travis CI
• work on pkgdown

v.0.4.0

v.0.4.0

• assignment_ngs and assignment_mixture code cleaning to prep for CRAN and
  make them easier to debug.

assigner + windows (PC) = parallel!!

v.0.3.9

• I'm pleased to announce that assigner now works in parallel with Windows
• bug fix introduce in last commit in write_gsi_sim where the file was not
  created properly from an internal module.

v.0.3.7

v.0.3.7

• assigner::fst_WC84 is 30% faster!

**v.0.3.6**

v.0.3.6

• bug fix assignment_ngs during imputations, the imputation module could not
  recognise that REF/ALT alleles are not necessary or usefull for assignment analysis.
  *enhancement to assignment_ngs and assignment_mixture so that when
  marker.number include "all" the iteration.method is set automatically to 1
  when conducting the assignment with all the markers.
  Iterations at this point is useless and a waist of time.
• random seed number is now stored in the appropriate files.
• assignment_mixture: with assignment.analysis = "gsi_sim the unknown/mixture samples
  are compared with baseline populations using common markers between the pair.
  Now, the tables include the number of markers used. The summary provides the mean
  number of markers. This number will change each time randomness is used.

**v.0.3.5**

v.0.3.5

• bug fix in population not recognise properly

v.0.3.4

v.0.3.4

• fst_NEI87: very fast function that can compute: the overall and pairwise Nei's (1987) fst and f'st (prime).
  Bootstrap resampling of markers is avalaible to build Confidence Intervals. The estimates are available as a data frame and a matrix with upper diagonal filled with Fst values and lower diagonal filled with the confidence intervals. Jost's D is also given ;)

v.0.3.3

v.0.3.3

• fst_WC84: bug fix, the function was not properly configured for multi-allelic markers (e.g. microsatellite, and haplotype format from STACKS). Thanks to Craig McDougall for catching this.

v.0.2.9

v.0.2.9

• updated vignettes
• bug fix in fst_WC84
• bug fix between assinger -> devtools -> github -> travis, this page helped

v.0.2.8 bug fix

v.0.2.8

• While changing some lines with tidyr::spread and tidyr::gather for data.table::dcast.data.table and data.table::melt.data.table to make the code faster, I forgot to split genotype into alleles for gsi_sim.
• please update both stackr and assigner
• the build error from Travis will be fixed soon.
  It should not affect the package "experience"" in any way.