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nfrerebeau committed Jun 23, 2022
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4 changes: 3 additions & 1 deletion README.Rmd
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An easy way to examine archaeological count data. **tabula** provides several tests and measures of diversity: heterogeneity and evenness (Brillouin, Shannon, Simpson, etc.), richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.), turnover and similarity (Brainerd-Robinson, etc.). The package make it easy to visualize count data and statistical thresholds: rank vs. abundance plots, heatmaps, @ford1962 and @bertin1977 diagrams.

[**kairos**](https://www.tesselle.org/kairos/) is a companion package to **tabula** that provides functions for chronological modeling and dating of archaeological assemblages from count data.
[**kairos**](https://packages.tesselle.org/kairos/) is a companion package to **tabula** that provides functions for chronological modeling and dating of archaeological assemblages from count data.

```{r citation, echo=FALSE, comment=''}
utils::citation("tabula")
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Measure diversity by comparing to simulated assemblages:

```{r sample-size, fig.width=3.5, fig.height=3.5, fig.show="hold"}
set.seed(12345)
## Data from Conkey 1980, Kintigh 1989, p. 28
chevelon %>%
heterogeneity(method = "shannon") %>%
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8 changes: 5 additions & 3 deletions README.md
Expand Up @@ -44,9 +44,9 @@ etc.). The package make it easy to visualize count data and statistical
thresholds: rank vs. abundance plots, heatmaps, Ford (1962) and Bertin
(1977) diagrams.

[**kairos**](https://www.tesselle.org/kairos/) is a companion package to
**tabula** that provides functions for chronological modeling and dating
of archaeological assemblages from count data.
[**kairos**](https://packages.tesselle.org/kairos/) is a companion
package to **tabula** that provides functions for chronological modeling
and dating of archaeological assemblages from count data.


To cite tabula in publications use:
Expand Down Expand Up @@ -158,6 +158,8 @@ heterogeneity(mississippi, method = "shannon")
Measure diversity by comparing to simulated assemblages:

``` r
set.seed(12345)

## Data from Conkey 1980, Kintigh 1989, p. 28
chevelon %>%
heterogeneity(method = "shannon") %>%
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5 changes: 0 additions & 5 deletions _pkgdown.yml
Expand Up @@ -10,9 +10,6 @@ reference:
- title: Diversity Measures
contents:
- has_concept("diversity measures")
- title: Seriation
contents:
- has_concept("seriation")
- title: Visualization
contents:
- has_concept("plot methods")
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menu:
- text: Diversity Measures
href: articles/diversity.html
- text: Seriation Methods
href: articles/seriation.html
- text: Bibliography
href: articles/bibliography.html
1 change: 1 addition & 0 deletions cran-comments.md
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* CRAN package check warning ("replacing previous import") has been fixed.
* Some links in the documentation point to articles behind paywalls that may return a 403 error.
* This is a resubmission.

## revdepcheck results

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