Prepare for next release

CITATION.cff

@@ -8,7 +8,7 @@ message: 'To cite package "arkhe" in publications use:'
 type: software
 license: GPL-3.0-or-later
 title: 'arkhe: Tools for Cleaning Rectangular Data'
-version: 1.3.0
+version: 1.4.0
 doi: 10.5281/zenodo.3526659
 abstract: A dependency-free collection of simple functions for cleaning rectangular
   data. This package allows to detect, count and replace values or discard rows/columns
@@ -32,12 +32,11 @@ preferred-citation:
   year: '2023'
   location:
     name: Pessac, France
-  notes: R package version 1.3.0
+  notes: R package version 1.4.0
   url: https://packages.tesselle.org/arkhe/
   doi: 10.5281/zenodo.3526659
   institution:
     name: Université Bordeaux Montaigne
-repository: https://CRAN.R-project.org/package=arkhe
 repository-code: https://github.com/tesselle/arkhe
 url: https://packages.tesselle.org/arkhe/
 contact:
@@ -63,6 +62,17 @@ references:
   institution:
     name: R Foundation for Statistical Computing
   version: '>= 3.5'
+- type: software
+  title: graphics
+  abstract: 'R: A Language and Environment for Statistical Computing'
+  notes: Imports
+  authors:
+  - name: R Core Team
+  location:
+    name: Vienna, Austria
+  year: '2023'
+  institution:
+    name: R Foundation for Statistical Computing
 - type: software
   title: methods
   abstract: 'R: A Language and Environment for Statistical Computing'

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: arkhe
 Title: Tools for Cleaning Rectangular Data
-Version: 1.3.0.9000
+Version: 1.4.0
 Authors@R: c(
     person("Nicolas", "Frerebeau", , "nicolas.frerebeau@u-bordeaux-montaigne.fr", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-5759-4944", affiliation = "Université Bordeaux Montaigne")),
@@ -20,6 +20,7 @@ BugReports: https://github.com/tesselle/arkhe/issues
 Depends: 
     R (>= 3.5)
 Imports: 
+    graphics,
     methods,
     stats,
     utils
@@ -44,8 +45,10 @@ Collate:
     'discard.R'
     'keep.R'
     'mathematics.R'
+    'plot.R'
     'remove.R'
     'replace.R'
+    'scale.R'
     'statistics.R'
     'utilities.R'
     'zzz.R'

NEWS.md

@@ -1,5 +1,11 @@
-# arkhe 1.3.0.9000
+# arkhe 1.4.0
+## New classes and methods
+* Add `%||%` to replace `NULL` with a default value.
+* Add `%+%` to concatenate character vectors.
+* Add `scale_range` to rescale a continuous vector to have specified minimum and maximum.
+
 ## Bugfixes & changes
+* Remove deprecated methods.
 * Remove `na.rm` argument of numeric predicates (so that the length of the output equals the length of the input).
 
 # arkhe 1.3.0

R/arkhe-package.R

@@ -2,7 +2,7 @@
 #'  \tabular{ll}{
 #'   **Package:** \tab arkhe \cr
 #'   **Type:** \tab Package \cr
-#'   **Version:** \tab 1.3.0 \cr
+#'   **Version:** \tab 1.4.0 \cr
 #'   **License:** \tab GPL-3 \cr
 #'   **Zenodo:** \tab \doi{10.5281/zenodo.3526659} \cr
 #'  }

README.Rmd

@@ -11,6 +11,7 @@ knitr::opts_chunk$set(
   fig.path = "man/figures/README-",
   out.width = NULL
 )
+Sys.setlocale("LC_MESSAGES", 'en_GB.UTF-8') # Force locale
 ```
 
 # arkhe <img width=120px src="man/figures/logo.png" align="right" />

README.md

@@ -45,17 +45,17 @@ messages.
       Frerebeau N (2023). _arkhe: Tools for Cleaning Rectangular Data_.
       Université Bordeaux Montaigne, Pessac, France.
       doi:10.5281/zenodo.3526659 <https://doi.org/10.5281/zenodo.3526659>,
-      R package version 1.3.0, <https://packages.tesselle.org/arkhe/>.
+      R package version 1.4.0, <https://packages.tesselle.org/arkhe/>.
 
-    Une entrée BibTeX pour les utilisateurs LaTeX est
+    A BibTeX entry for LaTeX users is
 
       @Manual{,
         author = {Nicolas Frerebeau},
         title = {{arkhe: Tools for Cleaning Rectangular Data}},
         year = {2023},
         organization = {Université Bordeaux Montaigne},
         address = {Pessac, France},
-        note = {R package version 1.3.0},
+        note = {R package version 1.4.0},
         url = {https://packages.tesselle.org/arkhe/},
         doi = {10.5281/zenodo.3526659},
       }
@@ -93,50 +93,49 @@ k <- sample(1:25, 3, FALSE)
 X[k] <- NA
 X
 #>      [,1] [,2] [,3] [,4] [,5]
-#> [1,]    5    8   NA    3    5
-#> [2,]    9    7    8    4    2
-#> [3,]    4   10    7   NA    2
-#> [4,]   NA    5    5    4    3
-#> [5,]    7    9    9    8    1
+#> [1,]    9   10   10    4    9
+#> [2,]    1    6    6   10    4
+#> [3,]   NA    3   NA    3    5
+#> [4,]    3   10    2    8   NA
+#> [5,]    4    9    3    9    3
 
 ## Count missing values in rows
 count(X, f = is.na, margin = 1)
-#> [1] 1 0 1 1 0
+#> [1] 0 0 2 1 0
 ## Count non-missing values in columns
 count(X, f = is.na, margin = 2, negate = TRUE)
-#> V1 V2 V3 V4 V5 
-#>  4  5  4  4  5
+#> [1] 4 5 4 5 4
 
 ## Find row with NA
 detect(X, f = is.na, margin = 1)
-#> [1]  TRUE FALSE  TRUE  TRUE FALSE
+#> [1] FALSE FALSE  TRUE  TRUE FALSE
 ## Find column without any NA
 detect(X, f = is.na, margin = 2, negate = TRUE, all = TRUE)
-#>    V1    V2    V3    V4    V5 
-#> FALSE  TRUE FALSE FALSE  TRUE
+#> [1] FALSE  TRUE FALSE  TRUE FALSE
 
 ## Remove row with any NA
 discard(X, f = is.na, margin = 1, all = FALSE)
 #>      [,1] [,2] [,3] [,4] [,5]
-#> [1,]    9    7    8    4    2
-#> [2,]    7    9    9    8    1
+#> [1,]    9   10   10    4    9
+#> [2,]    1    6    6   10    4
+#> [3,]    4    9    3    9    3
 ## Remove column with any NA
 discard(X, f = is.na, margin = 2, all = FALSE)
 #>      [,1] [,2]
-#> [1,]    8    5
-#> [2,]    7    2
-#> [3,]   10    2
-#> [4,]    5    3
-#> [5,]    9    1
+#> [1,]   10    4
+#> [2,]    6   10
+#> [3,]    3    3
+#> [4,]   10    8
+#> [5,]    9    9
 
 ## Replace NA with zeros
 replace_NA(X, value = 0)
 #>      [,1] [,2] [,3] [,4] [,5]
-#> [1,]    5    8    0    3    5
-#> [2,]    9    7    8    4    2
-#> [3,]    4   10    7    0    2
-#> [4,]    0    5    5    4    3
-#> [5,]    7    9    9    8    1
+#> [1,]    9   10   10    4    9
+#> [2,]    1    6    6   10    4
+#> [3,]    0    3    0    3    5
+#> [4,]    3   10    2    8    0
+#> [5,]    4    9    3    9    3
 ```
 
 ## Contributing

codemeta.json

@@ -8,19 +8,13 @@
   "codeRepository": "https://github.com/tesselle/arkhe",
   "issueTracker": "https://github.com/tesselle/arkhe/issues",
   "license": "https://spdx.org/licenses/GPL-3.0",
-  "version": "1.3.0.9000",
+  "version": "1.4.0",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
     "url": "https://r-project.org"
   },
   "runtimePlatform": "R version 4.3.1 (2023-06-16)",
-  "provider": {
-    "@id": "https://cran.r-project.org",
-    "@type": "Organization",
-    "name": "Comprehensive R Archive Network (CRAN)",
-    "url": "https://cran.r-project.org"
-  },
   "author": [
     {
       "@type": "Person",
@@ -52,14 +46,7 @@
     {
       "@type": "SoftwareApplication",
       "identifier": "tinytest",
-      "name": "tinytest",
-      "provider": {
-        "@id": "https://cran.r-project.org",
-        "@type": "Organization",
-        "name": "Comprehensive R Archive Network (CRAN)",
-        "url": "https://cran.r-project.org"
-      },
-      "sameAs": "https://CRAN.R-project.org/package=tinytest"
+      "name": "tinytest"
     }
   ],
   "softwareRequirements": {
@@ -70,23 +57,28 @@
       "version": ">= 3.5"
     },
     "2": {
+      "@type": "SoftwareApplication",
+      "identifier": "graphics",
+      "name": "graphics"
+    },
+    "3": {
       "@type": "SoftwareApplication",
       "identifier": "methods",
       "name": "methods"
     },
-    "3": {
+    "4": {
       "@type": "SoftwareApplication",
       "identifier": "stats",
       "name": "stats"
     },
-    "4": {
+    "5": {
       "@type": "SoftwareApplication",
       "identifier": "utils",
       "name": "utils"
     },
     "SystemRequirements": null
   },
-  "fileSize": "256.781KB",
+  "fileSize": "275.718KB",
   "citation": [
     {
       "@type": "SoftwareSourceCode",
@@ -101,7 +93,7 @@
       "name": "{arkhe: Tools for Cleaning Rectangular Data}",
       "identifier": "10.5281/zenodo.3526659",
       "url": "https://packages.tesselle.org/arkhe/",
-      "description": "R package version 1.3.0.9000",
+      "description": "R package version 1.4.0",
       "@id": "https://doi.org/10.5281/zenodo.3526659",
       "sameAs": "https://doi.org/10.5281/zenodo.3526659"
     }

cran-comments.md

@@ -10,7 +10,7 @@
 
 ## revdepcheck results
 
-We checked 4 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
+We checked 3 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
 
-* We saw 0 new problems
-* We failed to check 0 packages
+ * We saw 0 new problems
+ * We failed to check 0 packages

revdep/README.md

@@ -10,15 +10,15 @@
 |collate  |fr_FR.UTF-8                                                                  |
 |ctype    |fr_FR.UTF-8                                                                  |
 |tz       |Europe/Paris                                                                 |
-|date     |2023-08-31                                                                   |
-|rstudio  |2023.06.1+524 Mountain Hydrangea (desktop)                                   |
+|date     |2023-10-27                                                                   |
+|rstudio  |2023.09.0+463 Desert Sunflower (desktop)                                     |
 |pandoc   |3.1.1 @ /usr/lib/rstudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown) |
 
 # Dependencies
 
 |package |old   |new   |Δ  |
 |:-------|:-----|:-----|:--|
-|arkhe   |1.2.0 |1.3.0 |*  |
+|arkhe   |1.3.0 |1.4.0 |*  |
 
 # Revdeps
 

revdep/cran.md

@@ -1,6 +1,6 @@
 ## revdepcheck results
 
-We checked 4 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
+We checked 3 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
 
  * We saw 0 new problems
  * We failed to check 0 packages