Prepare for next release

CITATION.cff

@@ -8,7 +8,7 @@ message: 'To cite package "arkhe" in publications use:'
 type: software
 license: GPL-3.0-or-later
 title: 'arkhe: Tools for Cleaning Rectangular Data'
-version: 1.2.0
+version: 1.3.0
 doi: 10.5281/zenodo.3526659
 abstract: A dependency-free collection of simple functions for cleaning rectangular
   data. This package allows to detect, count and replace values or discard rows/columns
@@ -32,7 +32,7 @@ preferred-citation:
   year: '2023'
   location:
     name: Pessac, France
-  notes: R package version 1.2.0
+  notes: R package version 1.3.0
   url: https://packages.tesselle.org/arkhe/
   doi: 10.5281/zenodo.3526659
   institution:
@@ -62,7 +62,7 @@ references:
   year: '2023'
   institution:
     name: R Foundation for Statistical Computing
-  version: '>= 3.3'
+  version: '>= 3.5'
 - type: software
   title: methods
   abstract: 'R: A Language and Environment for Statistical Computing'
@@ -97,17 +97,17 @@ references:
   institution:
     name: R Foundation for Statistical Computing
 - type: software
-  title: testthat
-  abstract: 'testthat: Unit Testing for R'
+  title: tinytest
+  abstract: 'tinytest: Lightweight and Feature Complete Unit Testing Framework'
   notes: Suggests
-  url: https://testthat.r-lib.org
-  repository: https://CRAN.R-project.org/package=testthat
+  url: https://github.com/markvanderloo/tinytest
+  repository: https://CRAN.R-project.org/package=tinytest
   authors:
-  - family-names: Wickham
-    given-names: Hadley
-    email: hadley@rstudio.com
+  - family-names: van der Loo
+    given-names: Mark
+    email: mark.vanderloo@gmail.com
+    orcid: https://orcid.org/0000-0002-9807-4686
   year: '2023'
-  version: '>= 3.0.0'
 identifiers:
 - description: The concept DOI.
   type: doi

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: arkhe
 Title: Tools for Cleaning Rectangular Data
-Version: 1.2.0.9000
+Version: 1.3.0
 Authors@R: c(
     person("Nicolas", "Frerebeau", , "nicolas.frerebeau@u-bordeaux-montaigne.fr", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-5759-4944", affiliation = "Université Bordeaux Montaigne")),

NEWS.md

@@ -1,4 +1,4 @@
-# arkhe 1.2.0.9000
+# arkhe 1.3.0
 ## New classes and methods
 * Add `remove_constant()` to remove constant columns.
 * Add `remove_empty()` to remove empty strings in a `matrix`-like object.

R/arkhe-package.R

@@ -2,7 +2,7 @@
 #'  \tabular{ll}{
 #'   **Package:** \tab arkhe \cr
 #'   **Type:** \tab Package \cr
-#'   **Version:** \tab 1.2.0 \cr
+#'   **Version:** \tab 1.3.0 \cr
 #'   **License:** \tab GPL-3 \cr
 #'   **Zenodo:** \tab \doi{10.5281/zenodo.3526659} \cr
 #'  }

README.md

@@ -45,7 +45,7 @@ messages.
       Frerebeau N (2023). _arkhe: Tools for Cleaning Rectangular Data_.
       Université Bordeaux Montaigne, Pessac, France.
       doi:10.5281/zenodo.3526659 <https://doi.org/10.5281/zenodo.3526659>,
-      R package version 1.2.0, <https://packages.tesselle.org/arkhe/>.
+      R package version 1.3.0, <https://packages.tesselle.org/arkhe/>.
 
     Une entrée BibTeX pour les utilisateurs LaTeX est
 
@@ -55,7 +55,7 @@ messages.
         year = {2023},
         organization = {Université Bordeaux Montaigne},
         address = {Pessac, France},
-        note = {R package version 1.2.0},
+        note = {R package version 1.3.0},
         url = {https://packages.tesselle.org/arkhe/},
         doi = {10.5281/zenodo.3526659},
       }
@@ -93,49 +93,50 @@ k <- sample(1:25, 3, FALSE)
 X[k] <- NA
 X
 #>      [,1] [,2] [,3] [,4] [,5]
-#> [1,]   10    6    5    9    5
-#> [2,]    8   10    8    5    5
-#> [3,]    4   NA    6   NA    9
-#> [4,]    5   10   NA    6    1
-#> [5,]    8    7    4    3    5
+#> [1,]    5    8   NA    3    5
+#> [2,]    9    7    8    4    2
+#> [3,]    4   10    7   NA    2
+#> [4,]   NA    5    5    4    3
+#> [5,]    7    9    9    8    1
 
 ## Count missing values in rows
 count(X, f = is.na, margin = 1)
-#> [1] 0 0 2 1 0
+#> [1] 1 0 1 1 0
 ## Count non-missing values in columns
 count(X, f = is.na, margin = 2, negate = TRUE)
-#> [1] 5 4 4 4 5
+#> V1 V2 V3 V4 V5 
+#>  4  5  4  4  5
 
 ## Find row with NA
 detect(X, f = is.na, margin = 1)
-#> [1] FALSE FALSE  TRUE  TRUE FALSE
+#> [1]  TRUE FALSE  TRUE  TRUE FALSE
 ## Find column without any NA
 detect(X, f = is.na, margin = 2, negate = TRUE, all = TRUE)
-#> [1]  TRUE FALSE FALSE FALSE  TRUE
+#>    V1    V2    V3    V4    V5 
+#> FALSE  TRUE FALSE FALSE  TRUE
 
 ## Remove row with any NA
 discard(X, f = is.na, margin = 1, all = FALSE)
 #>      [,1] [,2] [,3] [,4] [,5]
-#> [1,]   10    6    5    9    5
-#> [2,]    8   10    8    5    5
-#> [3,]    8    7    4    3    5
+#> [1,]    9    7    8    4    2
+#> [2,]    7    9    9    8    1
 ## Remove column with any NA
 discard(X, f = is.na, margin = 2, all = FALSE)
 #>      [,1] [,2]
-#> [1,]   10    5
-#> [2,]    8    5
-#> [3,]    4    9
-#> [4,]    5    1
-#> [5,]    8    5
+#> [1,]    8    5
+#> [2,]    7    2
+#> [3,]   10    2
+#> [4,]    5    3
+#> [5,]    9    1
 
 ## Replace NA with zeros
 replace_NA(X, value = 0)
 #>      [,1] [,2] [,3] [,4] [,5]
-#> [1,]   10    6    5    9    5
-#> [2,]    8   10    8    5    5
-#> [3,]    4    0    6    0    9
-#> [4,]    5   10    0    6    1
-#> [5,]    8    7    4    3    5
+#> [1,]    5    8    0    3    5
+#> [2,]    9    7    8    4    2
+#> [3,]    4   10    7    0    2
+#> [4,]    0    5    5    4    3
+#> [5,]    7    9    9    8    1
 ```
 
 ## Contributing

_pkgdown.yml

@@ -13,6 +13,12 @@ reference:
 - title: Data transformation
   contents:
   - has_concept("transformation tools")
+- title: Predicates
+  contents:
+  - has_concept("predicates")
+- title: Validation
+  contents:
+  - has_concept("validation methods")
 - title: Statistics
   contents:
   - has_concept("summary statistics")
@@ -22,9 +28,3 @@ reference:
 - title: Mathematics
   contents:
   - has_concept("mathematic functions")
-- title: Predicates
-  contents:
-  - has_concept("predicates")
-- title: Validation
-  contents:
-  - has_concept("validation methods")

codemeta.json

@@ -8,7 +8,7 @@
   "codeRepository": "https://github.com/tesselle/arkhe",
   "issueTracker": "https://github.com/tesselle/arkhe/issues",
   "license": "https://spdx.org/licenses/GPL-3.0",
-  "version": "1.2.0.9000",
+  "version": "1.3.0",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
@@ -86,7 +86,7 @@
     },
     "SystemRequirements": null
   },
-  "fileSize": "245.76KB",
+  "fileSize": "256.739KB",
   "citation": [
     {
       "@type": "SoftwareSourceCode",
@@ -101,7 +101,7 @@
       "name": "{arkhe: Tools for Cleaning Rectangular Data}",
       "identifier": "10.5281/zenodo.3526659",
       "url": "https://packages.tesselle.org/arkhe/",
-      "description": "R package version 1.2.0",
+      "description": "R package version 1.3.0",
       "@id": "https://doi.org/10.5281/zenodo.3526659",
       "sameAs": "https://doi.org/10.5281/zenodo.3526659"
     }

cran-comments.md

@@ -1,5 +1,5 @@
 ## Test environments
-* Local R installation: R 4.3.0
+* Local R installation: R 4.3.1
 * Ubuntu (on GitHub Actions): R devel, release, oldrel
 * Windows (on GitHub Actions and win-builder): R devel, release, oldrel
 * MacOS (on GitHub Actions): R release
@@ -10,7 +10,7 @@
 
 ## revdepcheck results
 
-We checked 3 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
+We checked 4 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
 
- * We saw 0 new problems
- * We failed to check 0 packages
+* We saw 0 new problems
+* We failed to check 0 packages

inst/CITATION

@@ -7,7 +7,7 @@ bibentry(
   year         = "2023",
   organization = "Université Bordeaux Montaigne",
   address      = "Pessac, France",
-  note         = "R package version 1.2.0",
+  note         = sprintf("R package version %s", meta$Version),
   url          = "https://packages.tesselle.org/arkhe/",
   doi          = "10.5281/zenodo.3526659"
 )

revdep/README.md

@@ -1,24 +1,24 @@
 # Platform
 
-|field    |value                                                                         |
-|:--------|:-----------------------------------------------------------------------------|
-|version  |R version 4.3.0 (2023-04-21)                                                  |
-|os       |Ubuntu 20.04.6 LTS                                                            |
-|system   |x86_64, linux-gnu                                                             |
-|ui       |RStudio                                                                       |
-|language |(EN)                                                                          |
-|collate  |fr_FR.UTF-8                                                                   |
-|ctype    |fr_FR.UTF-8                                                                   |
-|tz       |Europe/Paris                                                                  |
-|date     |2023-05-10                                                                    |
-|rstudio  |2023.03.0+386 Cherry Blossom (desktop)                                        |
-|pandoc   |2.19.2 @ /usr/lib/rstudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown) |
+|field    |value                                                                        |
+|:--------|:----------------------------------------------------------------------------|
+|version  |R version 4.3.1 (2023-06-16)                                                 |
+|os       |Ubuntu 22.04.3 LTS                                                           |
+|system   |x86_64, linux-gnu                                                            |
+|ui       |RStudio                                                                      |
+|language |(EN)                                                                         |
+|collate  |fr_FR.UTF-8                                                                  |
+|ctype    |fr_FR.UTF-8                                                                  |
+|tz       |Europe/Paris                                                                 |
+|date     |2023-08-31                                                                   |
+|rstudio  |2023.06.1+524 Mountain Hydrangea (desktop)                                   |
+|pandoc   |3.1.1 @ /usr/lib/rstudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown) |
 
 # Dependencies
 
 |package |old   |new   |Δ  |
 |:-------|:-----|:-----|:--|
-|arkhe   |1.1.0 |1.2.0 |*  |
+|arkhe   |1.2.0 |1.3.0 |*  |
 
 # Revdeps
 

revdep/cran.md

@@ -1,6 +1,6 @@
 ## revdepcheck results
 
-We checked 3 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
+We checked 4 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
 
  * We saw 0 new problems
  * We failed to check 0 packages