Merge branch 'refsDOI'

DESCRIPTION

@@ -1,23 +1,28 @@
 Package: bridgedist
-Title: An Implementation of the Bridge Distribution with Logit-Link as in Wang and Louis (2003)
+Title: An Implementation of the Bridge Distribution with Logit-Link as in Wang
+    and Louis (2003)
 Version: 0.1.0
 Authors@R: person("Bruce", "Swihart", email = "bruce.swihart@gmail.com", role = c("aut", "cre"))
-Description: An implementation of the bridge distribution with logit-link in R.
-    In Wang and Louis (2003), such a univariate bridge distribution was derived as the distribution of
-    the random intercept that 'bridged' a marginal logistic regression and a conditional logistic
-    regression. The conditional and marginal regression coefficients are a scalar multiple of each other.
-    Such is not the case if the random intercept distribution was Gaussian.
+Description: An implementation of the bridge distribution with logit-link in
+    R. In Wang and Louis (2003) <DOI:10.1093/biomet/90.4.765>, such a univariate
+    bridge distribution was derived as the distribution of the random intercept that
+    'bridged' a marginal logistic regression and a conditional logistic regression.
+    The conditional and marginal regression coefficients are a scalar multiple
+    of each other. Such is not the case if the random intercept distribution was
+    Gaussian.
 Depends:
     R (>= 3.0.0)
 License: GPL-2
 LazyData: true
-RoxygenNote: 5.0.1.9000
-Suggests: knitr,
+RoxygenNote: 5.0.1
+Suggests:
+    knitr,
     rmarkdown,
     reshape2,
     ggplot2,
     testthat
-Imports: stats
+Imports:
+    stats
 VignetteBuilder: knitr
-URL:  http://github.com/swihart/bridgedist
+URL: http://github.com/swihart/bridgedist
 BugReports: http://github.com/swihart/bridgedist/issues

R/Bridge.R

@@ -46,17 +46,17 @@
 ##'
 ##' @seealso \link{Distributions} for other standard distributions.
 ##' @references Wang, Z. and Louis, T.A. (2003) Matching conditional and marginal shapes in binary random intercept models using
-##' a bridge distribution function. \emph{Biometrika}, 90(4), 765-775.
+##' a bridge distribution function. \emph{Biometrika}, 90(4), 765-775. <DOI:10.1093/biomet/90.4.765>
 ##'
 ##' See also:
 ##'
-##' Swihart, B.J., Caffo, B.S., and Crainiceanu, C.M. (2013). A Unifying Framework for Marginalized Random-Intercept Models of Correlated Binary Outcomes. \emph{International Statistical Review}, 82 (2), 275-295 1-22.
+##' Swihart, B.J., Caffo, B.S., and Crainiceanu, C.M. (2013). A Unifying Framework for Marginalized Random-Intercept Models of Correlated Binary Outcomes. \emph{International Statistical Review}, 82 (2), 275-295 1-22.  <DOI: 10.1111/insr.12035>
 ##'
-##' Griswold, M.E., Swihart, B.J., Caffo, B.S and Zeger, S.L. (2013). Practical marginalized multilevel models. Stat, 2(1), 129-142.
+##' Griswold, M.E., Swihart, B.J., Caffo, B.S and Zeger, S.L. (2013). Practical marginalized multilevel models. Stat, 2(1), 129-142. <DOI: 10.1002/sta4.22>
 ##'
-##' Heagerty, P.J. (1999). Marginally specified logistic-normal models for longitudinal binary data. Biometrics, 55(3), 688-698.
+##' Heagerty, P.J. (1999). Marginally specified logistic-normal models for longitudinal binary data. Biometrics, 55(3), 688-698.  <DOI: 10.1111/j.0006-341X.1999.00688.x>
 ##'
-##' Heagerty, P.J. and Zeger, S.L. (2000). Marginalized multilevel models and likelihood inference (with comments and a rejoinder by the authors). Stat. Sci., 15(1), 1-26.
+##' Heagerty, P.J. and Zeger, S.L. (2000). Marginalized multilevel models and likelihood inference (with comments and a rejoinder by the authors). Stat. Sci., 15(1), 1-26.  <DOI: 10.1214/ss/1009212671>
 ##'
 ##' @source \code{[dpq]bridge} are calculated directly from the definitions.
 ##'

cran-comments.md

@@ -14,5 +14,9 @@ There was 1 NOTE:
 
 * 1st submission
 
+## CRAN Review process
+
+* Added DOI in DESCRIPTION and man
+
 ## Downstream dependencies
 None.