Fix test again #606
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| name: Test | |
| on: | |
| push: | |
| branches-ignore: | |
| - wheels | |
| - pypi | |
| pull_request: | |
| branches: | |
| - main | |
| - dev | |
| jobs: | |
| test: | |
| name: Test (${{ matrix.os }}, py${{ matrix.python-version }}, tf${{ matrix.tensorflow }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| # https://docs.github.com/en/actions/using-jobs/using-a-matrix-for-your-jobs | |
| os: [ubuntu-20.04, windows-latest, macos-13] | |
| python-version: ['3.6', '3.7', '3.8', '3.9', '3.10', '3.11', '3.12'] | |
| tensorflow: [1, 2] | |
| include: | |
| # always set 'package-extras' conditional on tensorflow version | |
| - tensorflow: 1 | |
| package-extras: 'test,tf1' | |
| - tensorflow: 2 | |
| package-extras: 'test' | |
| # test bioimage.io export with python 3.7 and tensorflow 1 | |
| - python-version: '3.7' | |
| tensorflow: 1 | |
| package-extras: 'test,tf1,bioimageio' | |
| # install edt with numpy>=1.20 when testing with python 3.9 | |
| - python-version: '3.9' | |
| deps-extra: 'edt "numpy>=1.20"' | |
| # add extra run to test latest tensorflow with legacy keras | |
| - os: ubuntu-20.04 | |
| python-version: '>=3.12 <3.13' # intentionally be different than '3.12' to cause an additional combination | |
| tensorflow: 2 | |
| package-extras: 'test' | |
| deps-extra: 'tf_keras' | |
| exec-extra: 'echo "TF_USE_LEGACY_KERAS=1" >> $GITHUB_ENV' | |
| exclude: | |
| # https://www.tensorflow.org/install/source#tested_build_configurations | |
| - python-version: '3.8' | |
| tensorflow: 1 | |
| - python-version: '3.9' | |
| tensorflow: 1 | |
| - python-version: '3.10' | |
| tensorflow: 1 | |
| - python-version: '3.11' | |
| tensorflow: 1 | |
| - python-version: '3.12' | |
| tensorflow: 1 | |
| - os: windows-latest | |
| tensorflow: 1 | |
| steps: | |
| - name: Install Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Upgrade pip, wheel, setuptools | |
| run: python -m pip install --upgrade pip wheel setuptools | |
| - name: Install TensorFlow | |
| run: pip install "tensorflow==${{ matrix.tensorflow }}.*" | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| # # should also work with clang, but there are | |
| # # openmp-related symbol issues just when using Python 3.6? | |
| # - name: Use GCC on macOS | |
| # if: startsWith(matrix.os, 'macos') | |
| # run: | | |
| # brew config | |
| # brew install gcc@9 | |
| # echo "CC=/usr/local/bin/gcc-9" >> $GITHUB_ENV | |
| # echo "CXX=/usr/local/bin/g++-9" >> $GITHUB_ENV | |
| - name: Install extra dependencies (if any) | |
| if: ${{ matrix.deps-extra }} | |
| run: pip install ${{ matrix.deps-extra }} | |
| - name: Install package | |
| run: pip install ".[${{ matrix.package-extras }}]" | |
| - name: Run extra commands (if any) | |
| if: ${{ matrix.exec-extra }} | |
| run: ${{ matrix.exec-extra }} | |
| shell: bash | |
| - name: Disable PytestReturnNotNoneWarning (Python 3.7+) | |
| if: matrix.python-version != 3.6 | |
| run: echo "PYTEST_ADDOPTS='-W ignore::pytest.PytestReturnNotNoneWarning'" >> $GITHUB_ENV | |
| shell: bash | |
| - name: Run tests | |
| run: pytest -m "not gpu" |