Test (PyPI) #362
Workflow file for this run
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| name: Test (PyPI) | |
| on: | |
| schedule: | |
| - cron: "0 18 * * 1,3,5" | |
| jobs: | |
| test: | |
| name: Test PyPI (${{ matrix.os }}, py${{ matrix.python-version }}, tf${{ matrix.tensorflow }}) | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| SETUPTOOLS_USE_DISTUTILS: stdlib | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-20.04, windows-latest, macos-latest] | |
| python-version: ['3.6', '3.7', '3.8', '3.9', '3.10'] | |
| tensorflow: [1, 2] | |
| exclude: | |
| # https://www.tensorflow.org/install/pip#system-requirements | |
| - python-version: '3.8' | |
| tensorflow: 1 | |
| - python-version: '3.9' | |
| tensorflow: 1 | |
| - python-version: '3.10' | |
| tensorflow: 1 | |
| - os: windows-latest | |
| tensorflow: 1 | |
| steps: | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - run: python -m pip install --upgrade pip wheel setuptools | |
| - run: pip install "tensorflow==${{ matrix.tensorflow }}.*" | |
| - uses: actions/checkout@v3 | |
| - if: matrix.tensorflow == 1 | |
| run: echo "package_extras=test,tf1" >> $GITHUB_ENV | |
| shell: bash | |
| - if: matrix.tensorflow == 2 | |
| run: echo "package_extras=test" >> $GITHUB_ENV | |
| shell: bash | |
| - name: Install edt | |
| if: matrix.python-version == 3.9 | |
| run: pip install edt "numpy>=1.20" | |
| - name: Install package from source (just to test wheel building) | |
| if: startsWith(matrix.os, 'windows') == false | |
| run: pip install --no-binary stardist "stardist[${{env.package_extras}}]" | |
| - name: Install package from source (just to test wheel building) - Windows | |
| if: startsWith(matrix.os, 'windows') | |
| run: pip install --no-binary stardist "stardist[${{env.package_extras}}]" | |
| env: # cf. https://github.com/pypa/pip/issues/11231 | |
| TEMP: "/tmp" # notes: | |
| TMPDIR: "/tmp" # - /tmp should already exist on runner image | |
| TMP: "/tmp" # - set all temp-related env variables (had issues with when omitting some) | |
| - name: Install package from wheel | |
| run: | | |
| pip uninstall -y stardist | |
| pip install --no-cache-dir --only-binary stardist "stardist[${{env.package_extras}}]>0" | |
| - name: Install bioimage.io dependencies | |
| if: | | |
| matrix.python-version >= 3.7 && | |
| matrix.tensorflow == 1 | |
| run: pip install "stardist[bioimageio]" | |
| - run: pytest -v --durations=50 -m "not gpu" |