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change Codebook data default dtype to float #1975

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change Codebook data default dtype to float #1975

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4 changes: 2 additions & 2 deletions starfish/core/codebook/codebook.py
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Original file line number Diff line number Diff line change
Expand Up @@ -110,7 +110,7 @@ def zeros(cls, code_names: Sequence[str], n_round: int, n_channel: int):
codebook whose values are all zero

"""
data = np.zeros((len(code_names), n_round, n_channel), dtype=np.uint8)
data = np.zeros((len(code_names), n_round, n_channel), dtype=float)
return cls.from_numpy(code_names, n_round, n_channel, data)

@classmethod
Expand Down Expand Up @@ -295,7 +295,7 @@ def from_code_array(
target_names = [w[Features.TARGET] for w in code_array]

# fill the codebook
data = np.zeros((len(target_names), n_round, n_channel), dtype=np.uint8)
data = np.zeros((len(target_names), n_round, n_channel), dtype=float)
for i, code_dict in enumerate(code_array):
for bit in code_dict[Features.CODEWORD]:
ch = int(bit[Axes.CH])
Expand Down
2 changes: 1 addition & 1 deletion starfish/core/codebook/test/test_from_code_array.py
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Original file line number Diff line number Diff line change
Expand Up @@ -137,7 +137,7 @@ def test_create_codebook():
targets = [x[Features.TARGET] for x in code_array]

# Loop performed by from_code_array
data = np.zeros((2, 2, 3), dtype=np.uint8)
data = np.zeros((2, 2, 3), dtype=float)
for i, code_dict in enumerate(code_array):
for bit in code_dict[Features.CODEWORD]:
ch = int(bit[Axes.CH])
Expand Down