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624 Open 990 Closed
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Issues list

RocksDB-based RevIndex gather functionality is broken.
#3139 opened May 4, 2024 by ctb
Erroneous f_unique_to_query calculation in Rust code. rust
#3137 opened May 4, 2024 by ctb
1
2
sig overlap and sig subtract should be upgraded to support more than JSON sigs
#3136 opened May 4, 2024 by ctb
BrokenPipeError: [Errno 32] Broken pipe happend in sourmash compare command
#3134 opened Apr 30, 2024 by yuzie0314
1
mac os wheel builds are failing in latest
#3128 opened Apr 24, 2024 by ctb
1
maturin build is failing on latest for maturin wheels, arch ppc64le
#3125 opened Apr 22, 2024 by ctb
2
add sig grep -l to just print out the names of matches
#3120 opened Apr 18, 2024 by ctb
doco: GTDB R207 database inconsistency
#3118 opened Apr 16, 2024 by wwood
3
does --relpath in sourmash sig manifest etc. convert abspaths into relpaths?
#3115 opened Apr 13, 2024 by ctb
pursue spack release PR for sourmash 4.8.4 and beyond
#3113 opened Apr 10, 2024 by ctb
add conda-forge & sourmash-minimal into release checklist
#3112 opened Apr 10, 2024 by ctb
update authorship for zenodo integration?
#3111 opened Apr 9, 2024 by bluegenes
1
Index.select allows ksizes that aren't an integer.
#3107 opened Apr 6, 2024 by ctb
using fastmultigather to do contig-level gather and taxonomy assignment - a brief tutorial doc documentation content or issues faq things to add to an FAQ or docs
#3095 opened Mar 22, 2024 by ctb
searching database for any duplicates genomes
#3094 opened Mar 21, 2024 by SAMtoBAM
3
automatic upload to zenodo is not working
#3093 opened Mar 21, 2024 by ctb
wheel upload to github releases no longer seems to work as of v4.8.7
#3092 opened Mar 21, 2024 by ctb
revisit cibuildwheel configuration for 2.17.0
#3091 opened Mar 21, 2024 by ctb
produce more detailed error message when failing to load manifest from zipfile rust
#3086 opened Mar 19, 2024 by ctb
CITATION.cff software version not up to date?
#3080 opened Mar 18, 2024 by ccbaumler
4
sourmash vs aligners, & comparison with other tools
#3079 opened Mar 13, 2024 by ctb
9
deprecate/remove sourmash sig import for v5 5.0 issues to address for a 5.0 release
#3077 opened Mar 12, 2024 by ctb
moving towards sourmash v5, and building out our test infrastructure to support it 5.0 issues to address for a 5.0 release
#3076 opened Mar 11, 2024 by ctb
1
code coverage on PRs does not seem to be working developer_infrastructure
#3073 opened Mar 10, 2024 by ctb
change default sig check and sig collect behavior to use --relpath for v5 5.0 issues to address for a 5.0 release
#3071 opened Mar 8, 2024 by ctb
1
ProTip! no:milestone will show everything without a milestone.