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43 Open 51 Closed
43 Open 51 Closed
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Issues list

no outputs for speciation
#135 opened Oct 18, 2023 by qinghong2019
test_class (__main__._07_RunSNPs) ... FAIL
#130 opened Oct 2, 2022 by Daisyiscool
Question regarding speed of execution
#129 opened Jul 12, 2022 by rdauria
1
How can I use MIDAS to get pN/pS on a per-gene basis?
#127 opened Mar 9, 2022 by JuliaMcGonigle
Samtools missing binaries
#126 opened Feb 1, 2022 by kaysahu
3
samtools errors
#125 opened Jan 10, 2022 by tbazilegith
1
build custom database error
#124 opened Nov 12, 2021 by wangxgong
samtools invalid option 'f'
#123 opened Oct 26, 2021 by aflynncarroll
Database marker gene file "phyeco.map" has wrong genome_id label
#122 opened Sep 24, 2021 by zeqianli
Test 11 and 14 fails (and fixes)
#120 opened Aug 18, 2021 by zeqianli
Building database error
#119 opened Jul 14, 2021 by JX-Zhong
3
Can't download database
#118 opened May 16, 2021 by zckoo007
test_midas.py fail for test 7
#117 opened Apr 29, 2021 by linzhouzz
1
Strain tracking - getting identified strain names
#116 opened Feb 3, 2021 by sanpande
setup.py: add scripts
#114 opened Dec 19, 2020 by nick-youngblut
TypeError: cannot pickle '_io.TextIOWrapper' object
#112 opened Dec 17, 2020 by Ivan-vechetti
7
Error: could not execute bowtie2 binary
#110 opened Sep 16, 2020 by BoyanZhou
5
Conda Install
#108 opened Feb 28, 2020 by JChristopherEllis
5
Inconsistent species results
#107 opened Feb 20, 2020 by mcleanlab
Interpreting output from strain_tracking.py track_markers
#106 opened Dec 7, 2019 by dadahan
1
Strain tracking: identifying rare SNPs that discriminate individual strains
#105 opened Nov 12, 2019 by dadahan
Inclusion criteria for MAGs when setting up custom database
#104 opened Nov 6, 2019 by adityabandla
Support for Pavian
#100 opened May 13, 2019 by Anto007
MIDAS is looking in the wrong place for 3rd party executables
#99 opened Apr 1, 2019 by jolespin
2
Strain tarcking and "marker alleles"
#98 opened Mar 15, 2019 by VadimDu
1
ProTip! Adding no:label will show everything without a label.