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feat: Add improved visualization for clinical significance #301

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merged 6 commits into from
May 23, 2024

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fxwiegand
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This PR adds improved visualization for clinical significance.

@fxwiegand
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@FelixMoelder Could you test this when you have some time and update the color mapping

"unknown": "#6c757d", // gray
"not_provided": "#343a40", // dark gray
"other": "#adb5bd", // light gray
"benign": "#28a745", // green
"benign/likely_benign": "#218838", // dark green
"likely_benign": "#28a745", // green
"protective": "#20c997", // teal
"uncertain_significance": "#ffc107", // yellow
"conflicting_interpretations_of_pathogenicity": "#17a2b8", // cyan
"association": "#007bff", // blue
"affects": "#6f42c1", // purple
"drug_response": "#6610f2", // dark purple
"risk_factor": "#e3342f", // red
"likely_pathogenic": "#dc3545", // dark red
"pathogenic/likely_pathogenic": "#bd2130", // deep red
"pathogenic": "#dc3545" // dark red
to your liking?

@johanneskoester
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Cool, badges!

@FelixMoelder FelixMoelder marked this pull request as ready for review May 23, 2024 06:41
@FelixMoelder
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Thanks for adding this. I just did some minor changes to the coloring and this looks really helpful now!

@FelixMoelder FelixMoelder enabled auto-merge (squash) May 23, 2024 06:42
@FelixMoelder FelixMoelder merged commit 82eb4dd into snakemake-workflows:master May 23, 2024
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3 participants