Added precursor intensity to PSM, peptide proteoform output file

[zhuoxinshi]

No description provided.

[codecov]

Codecov Report

Attention: Patch coverage is 88.88889% with 3 lines in your changes are missing coverage. Please review.

Project coverage is 92.76%. Comparing base (5ee8567) to head (998c1b4).

Additional details and impacted files

@@            Coverage Diff             @@
##           master    #2365      +/-   ##
==========================================
- Coverage   92.76%   92.76%   -0.01%     
==========================================
  Files         137      137              
  Lines       21166    21179      +13     
  Branches     2924     2930       +6     
==========================================
+ Hits        19635    19646      +11     
- Misses       1049     1050       +1     
- Partials      482      483       +1     

Files	Coverage Δ
...etaMorpheus/EngineLayer/Ms2ScanWithSpecificMass.cs	97.11% <100.00%> (+0.14%)	⬆️
MetaMorpheus/EngineLayer/PsmTsv/PsmFromTsv.cs	96.86% <100.00%> (+0.01%)	⬆️
MetaMorpheus/EngineLayer/PsmTsv/PsmTsvReader.cs	89.21% <100.00%> (+0.10%)	⬆️
MetaMorpheus/EngineLayer/PsmTsv/PsmTsvWriter.cs	97.54% <100.00%> (+0.01%)	⬆️
MetaMorpheus/EngineLayer/SpectralMatch.cs	99.44% <75.00%> (-0.28%)	⬇️
MetaMorpheus/TaskLayer/MetaMorpheusTask.cs	88.48% <84.61%> (-0.13%)	⬇️

[codecov-commenter]

Codecov Report

Attention: Patch coverage is 94.59459% with 2 lines in your changes missing coverage. Please review.

Please upload report for BASE (master@661b1e5). Learn more about missing BASE report.

❗ Current head 5b8a2b4 differs from pull request most recent head abf6ad4

Please upload reports for the commit abf6ad4 to get more accurate results.

Additional details and impacted files

@@            Coverage Diff            @@
##             master    #2365   +/-   ##
=========================================
  Coverage          ?   92.79%           
=========================================
  Files             ?      137           
  Lines             ?    21186           
  Branches          ?     2930           
=========================================
  Hits              ?    19660           
  Misses            ?     1045           
  Partials          ?      481           

Files	Coverage Δ
MetaMorpheus/EngineLayer/CommonParameters.cs	95.58% <100.00%> (ø)
...etaMorpheus/EngineLayer/Ms2ScanWithSpecificMass.cs	97.11% <100.00%> (ø)
MetaMorpheus/EngineLayer/PsmTsv/PsmFromTsv.cs	96.86% <100.00%> (ø)
MetaMorpheus/EngineLayer/PsmTsv/PsmTsvReader.cs	89.21% <100.00%> (ø)
MetaMorpheus/EngineLayer/PsmTsv/PsmTsvWriter.cs	97.54% <100.00%> (ø)
MetaMorpheus/EngineLayer/SpectralMatch.cs	99.72% <100.00%> (ø)
MetaMorpheus/TaskLayer/MetaMorpheusTask.cs	88.48% <89.47%> (ø)

[Alexander-Sol]

You should add the new useMostAbundantPrecursorIntensity property to the SetAllFileSpecificCommonParams method in MetaMorpheusTask