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[r/ci] Point at correct TileDB-R location (#2275)
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* [r/ci] Point at correct TileDB-R location

* Restore valuable comment [skip-ci]

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johnkerl committed Mar 14, 2024
1 parent 0fcce69 commit 2d230e5
Showing 1 changed file with 14 additions and 6 deletions.
20 changes: 14 additions & 6 deletions .github/workflows/r-ci.yml
Original file line number Diff line number Diff line change
Expand Up @@ -60,16 +60,24 @@ jobs:
- name: Install BioConductor package SingleCellExperiment
run: cd apis/r && tools/r-ci.sh install_bioc SingleCellExperiment


# Uncomment these next two stanzas as needed whenever we've just released a new tiledb-r for
# which source is available but CRAN releases (and hence update r2u binaries) are not yet:
#
# IMPORTANT: these two stanzas should remain uncommented _only_ during the propagation time
# between (a) publication of source for a new TileDB-R _upon which_ TileDB-SOMA depends in its
# apis/R/DESCRIPTION file and (b) appearance of binaries.
#
# Please see https://github.com/single-cell-data/TileDB-SOMA/wiki/Branches-and-releases which
# is crucial for anyone doing releases of TileDB-SOMA.

- name: Install r-universe build of tiledb-r (macOS)
if: ${{ matrix.os == 'macOS-latest' }}
run: cd apis/r && Rscript -e "install.packages('tiledb', repos = c('https://eddelbuettel.r-universe.dev', 'https://cloud.r-project.org'))"
#- name: Install r-universe build of tiledb-r (macOS)
# if: ${{ matrix.os == 'macOS-latest' }}
# run: cd apis/r && Rscript -e "install.packages('tiledb', repos = c('https://eddelbuettel.r-universe.dev', 'https://cloud.r-project.org'))"

- name: Install r-universe build of tiledb-r (linux)
if: ${{ matrix.os != 'macOS-latest' }}
run: cd apis/r && Rscript -e "options(bspm.version.check=TRUE); install.packages('tiledb', repos = c('https://eddelbuettel.r-universe.dev/bin/linux/jammy/4.3/', 'https://cloud.r-project.org'))"
#- name: Install r-universe build of tiledb-r (linux)
# if: ${{ matrix.os != 'macOS-latest' }}
# run: cd apis/r && Rscript -e "options(bspm.version.check=TRUE); install.packages('tiledb', repos = c('https://eddelbuettel.r-universe.dev/bin/linux/jammy/4.3/', 'https://cloud.r-project.org'))"

- name: Install r-universe build of SeuratObject (macOS)
if: ${{ matrix.os == 'macOS-latest' }}
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