Releases: sigven/pcgr
Releases · sigven/pcgr
v1.4.1
v1.4.0
What's Changed
- Pick trans consequence patch by @sigven in #206
- Use VEP vcf as input to vcf2maf.pl by @sigven in #207
- Better handling of pcgr/pcgrr conda env custom naming by @pdiakumis in #208
- Update report style by @sigven in #209
Full Changelog: v1.3.0...v1.4.0
v1.3.0
v1.2.0
v1.0.3
v1.0.2
- Fixed JSON crash in CPSR
v1.0.1
v1.0.0
- Complete restructure of Python and R components. Installation now relies on two separate conda packages,
pcgr
(Python component) andpcgrr
(R component). Direct Docker support remains, with the Dockerfile simplified to rely exclusively on the installation of the above Conda packages. Significant contributon by the great @pdiakumis- VCF validation step removed. Feedback from users suggested that Ensembl's
vcf-validator
was often too stringent so its use has been deprecated. The--no_vcf_validate
option remains for backwards compatibility. - New documentation site (https://sigven.github.io/pcgr)
- Data bundle updates (CIViC, ClinVar, Open Targets Platform, CancerMine, UniProt KB, Pfam)
- CHANGELOG
- VCF validation step removed. Feedback from users suggested that Ensembl's
June 2021 release
- Data updates
- Software updates (R, VEP)
- No TOML - all command-line
- Possibility to Add CPSR contents to PCGR reports
Conda update
- Data updates
- Dockerfile improved with renv framework
- Improved consistency between Docker installation and Conda installation