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@sidbdri

SIDB/DRI Bioinformatics (Edinburgh)

Bioinformatics team for the Simons Initiative for the Developing Brain and the Edinburgh Centre of the UK Dementia Research Institute

Pinned

  1. LAB-AID LAB-AID Public

    LAB-AID (Laboratory Automated Interrogation of Data): an interactive web application for visualization of multi-level data from biological experiments

    R 1

  2. Sargasso Sargasso Public

    Forked from biomedicalinformaticsgroup/Sargasso

    Sargasso disambiguates mixed-species high-throughput sequencing data.

    Python

Repositories

Showing 10 of 12 repositories
  • sidbdri-utils Public

    Download and process genome sequences and annotations from Ensembl.

    Shell 1 0 3 0 Updated May 6, 2024
  • LAB-AID Public

    LAB-AID (Laboratory Automated Interrogation of Data): an interactive web application for visualization of multi-level data from biological experiments

    R 1 MIT 0 0 0 Updated Apr 25, 2024
  • cookiecutter-de_analysis_skeleton Public

    Skeleton for new differential expression analysis project.

    R 3 1 3 2 Updated Feb 27, 2024
  • tgfb_ko_scs Public

    Jing whole brain mouse single cell with WT and tgfb KO

    R 0 0 0 0 Updated Nov 15, 2022
  • empirical_utrs Public

    Calculate empirical 5' UTRs from CAGE data.

    Python 0 MIT 0 0 0 Updated Apr 26, 2022
  • shiny-rna-seq Public

    Shiny app for examining the results produced by a differential expression analysis project modelled on "cookiecutter-de_analysis_skeleton" repository.

    R 0 0 0 0 Updated Nov 25, 2021
  • transcript-utils Public

    Simple scripts to perform various tasks for gene transcripts and their sequences.

    Python 0 MIT 1 1 0 Updated Apr 28, 2021
  • GREAT Public

    Allows us to run the GREAT enrichment tools as part of our automatic pipeline.

    Shell 0 0 0 0 Updated Apr 26, 2021
  • enrichment_rshiny Public

    Small Shiny app to perform Fisher's exact test for enrichment on gene sets and plot Venn diagrams.

    R 0 0 1 0 Updated Apr 2, 2020
  • Sargasso Public Forked from biomedicalinformaticsgroup/Sargasso

    Sargasso disambiguates mixed-species high-throughput sequencing data.

    Python 0 4 0 0 Updated Aug 20, 2019
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