bd_oxidase_ff

Amber force field parameters for E. coli cytochrome bd oxidase (PDB: 6RKO) - please cite: https://doi.org/10.5281/zenodo.4742814

Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
6rko_final.pdb		6rko_final.pdb
LICENSE		LICENSE
README.md		README.md
README.txt		README.txt
heme.frcmod		heme.frcmod
heme.lib		heme.lib
heme_b558.xyz		heme_b558.xyz
heme_b595.xyz		heme_b595.xyz
heme_d.xyz		heme_d.xyz
mcpbpy.frcmod		mcpbpy.frcmod
protein.pdb		protein.pdb
protein.rst7		protein.rst7
protein_solv.pdb		protein_solv.pdb
protein_solv.prmtop		protein_solv.prmtop
protein_solv.rst7		protein_solv.rst7
protein_solv_equil.pdb		protein_solv_equil.pdb
protein_solv_equil.rst7		protein_solv_equil.rst7
tleap.in		tleap.in
ubiquinone.frcmod		ubiquinone.frcmod
ubiquinone.prepi		ubiquinone.prepi

shirleyahn/bd_oxidase_ff