Pinned

1. DeepRegFinder DeepRegFinder Public

   DeepRegFinder is a deep learning based program used to identify DNA regulatory elements using ChIP-seq

   Python 9 1

2. ngsplot ngsplot Public

   Quick mining and visualization of NGS data by integrating genomic databases

   R 247 65

3. ngsplotdb ngsplotdb Public

   Genome databases generation pipeline for ngs.plot and region_analysis.

   Shell 15 6

4. diffreps diffreps Public

   Differential analysis for ChIP-seq with biological replicates

   Perl 31 16

5. region_analysis region_analysis Public

   A python script used to annotate genomic intervals.

   Python 17 10

6. NGS-Data-Charmer NGS-Data-Charmer Public

   This repository hosts an automated NGS data analysis (RNA-seq and ChIP-seq) pipeline created using Snakemake.

   Python 4 3