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@shahcompbio

ShahCompBio

Computational biology tools from the Shah Lab

Popular repositories

  1. hmmcopy_utils hmmcopy_utils Public

    Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.

    C 36 14

  2. single_cell_pipeline single_cell_pipeline Public

    Single Cell Analysis Automated Workflow

    Python 26 18

  3. MultiModalMuSig.jl MultiModalMuSig.jl Public

    A Julia package for extracting mutation signatures using topic models

    Julia 18 4

  4. spectrum-tme spectrum-tme Public

    Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"

    R 17 7

  5. scvis scvis Public

    Python package for dimension reduction of high-dimensional biological data.

    Python 16 4

  6. timescape timescape Public

    Visualization tool for temporal clonal evolution.

    JavaScript 15 6

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