Tiling features #3
Open
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…or command line use - removed notebooks - started working on the read tiles part
…or command line use - removed notebooks - started working on the read tiles part
- generate_tiles.py: fix a LOGGER.info bug - generate_tiles.py: fix argparse for tile size - read_tiles.py: tweak the original code to accept multiple hdf5 files instead of a big one - this should allow us more flexibility/faster loading time while testing - read_tiles.ipynb: updated the notebook: it loads data from folder, generate tiles and plot tile outputs as examples
…h color_normalization - read_tiles_color_normalization.ipynb : notebook to generate rgb mean and std values for our dataset - read_tiles.py: added color normalization functions
…h color_normalization - read_tiles_color_normalization.ipynb : notebook to generate rgb mean and std values for our dataset - read_tiles.py: added color normalization functions
…s to generate the test set.
- read_tiles.py : add output green channel only bool - read_tiles.ipynb : add example with green layer
…de image - fix bug: verify that 2 masks are of the same size before combining them
- reshuffle of generate_tiles - remove bunch of unused histo/image alteration functions
- reshuffle of generate_tiles - remove bunch of unused histo/image alteration functions
new file: notebooks/SEGMENTATION_MODEL.ipynb
cleaned the notebook
- add a generator of tiles + mask - SIMPLE UNET SEGMENTATION_MODEL.ipynb added
- test on notebook SIMPLE UNET SEGMENTATION_MODEL.ipynb
modified: notebooks/train_model_inception_v3.ipynb modified: tiling/read_tiles.py modified: tiling/read_tiles_with_mask.py
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.