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Correct some typos
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sdray committed Dec 6, 2023
1 parent ae03612 commit cd236f4
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2 changes: 1 addition & 1 deletion course/session4/session4.Rmd
Expand Up @@ -63,7 +63,7 @@ dim(meaudret$spe)
head(meaudret$spe.names)
```
---
The data set contains the abundances of 13 Ephemeroptera species in 20 samples. The measurements have been made in 6 sites at each season along a small French stream (see `?meaudret`)
The data set contains the abundances of 13 Ephemeroptera species in 20 samples. The measurements have been made in 5 sites at each season along a small French stream (see `?meaudret`)

```{r}
head(meaudret$design)
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4 changes: 2 additions & 2 deletions practical/session3/session3.Rmd
Expand Up @@ -69,9 +69,9 @@ screeplot(acm1, main = " ", xlab = " ")
plot(acm1, col = TRUE)
```
---
# PCA scores on the geographical map
# MCA scores on the geographical map

* Draw maps of PCA scores on the first two axes
* Draw maps of MCA scores on the first two axes
* Interpret the maps to describe the environmental structure of the river

```{r, fig.dim=c(4,2), include = params$correction, echo = params$correction, results=res.correction}
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4 changes: 2 additions & 2 deletions practical/session4/session4.Rmd
Expand Up @@ -55,7 +55,7 @@ screeplot(coa1, main = " ", xlab = " ")
---
# Inertia statistics

* Compute the percentage of variation explained bu the first PCA axes
* Compute the percentage of variation explained by the first COA axes

```{r, include = params$correction, echo = params$correction, results=res.correction}
summary(coa1)
Expand Down Expand Up @@ -84,7 +84,7 @@ s.value(doubs$xy, coa1$li[, 1:2], pgrid.draw = FALSE, porigin.draw = FALSE,
---
# Principal Component Analysis

PCA can also be applied on the abundance table. Perform PCAon `doubs$fish` table. Should we scale or not?
PCA can also be applied on the abundance table. Perform PCA on `doubs$fish` table. Should we scale or not?

```{r, fig.dim=c(3.5, 3.5), include = params$correction, echo = params$correction, results=res.correction}
pca1 <- dudi.pca(doubs$fish, scale = FALSE, scannf = FALSE)
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